
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms   81 (   81),  selected   81 , name T0386TS599_5-D2
# Molecule2: number of CA atoms   81 (  636),  selected   81 , name T0386_D2.pdb
# PARAMETERS: T0386TS599_5-D2.T0386_D2.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    N     219      N     219           -
LGA    P     220      P     220           -
LGA    E     221      E     221           -
LGA    K     222      K     222           -
LGA    I     223      I     223           -
LGA    R     224      R     224           -
LGA    -       -      L     225           -
LGA    -       -      L     226           -
LGA    -       -      K     227           -
LGA    -       -      E     228           -
LGA    -       -      F     229           -
LGA    -       -      M     230           -
LGA    -       -      H     231           -
LGA    -       -      T     232           -
LGA    -       -      M     233           -
LGA    -       -      K     234           -
LGA    -       -      N     235           -
LGA    -       -      T     236           -
LGA    L     225      G     237           #
LGA    L     226      R     238          5.276
LGA    K     227      N     239          4.240
LGA    E     228      -       -           -
LGA    F     229      V     240          1.122
LGA    M     230      N     241          1.645
LGA    H     231      D     242          2.981
LGA    T     232      R     243          3.120
LGA    M     233      -       -           -
LGA    K     234      -       -           -
LGA    N     235      P     244          1.998
LGA    T     236      V     245          2.434
LGA    G     237      M     246          1.610
LGA    R     238      -       -           -
LGA    N     239      V     247          5.412
LGA    V     240      A     248          2.440
LGA    N     241      K     249          4.194
LGA    D     242      E     250           #
LGA    R     243      G     251          4.745
LGA    P     244      E     252          4.153
LGA    V     245      T     253          2.534
LGA    M     246      -       -           -
LGA    V     247      -       -           -
LGA    A     248      -       -           -
LGA    K     249      -       -           -
LGA    E     250      -       -           -
LGA    G     251      -       -           -
LGA    E     252      -       -           -
LGA    T     253      -       -           -
LGA    Y     254      -       -           -
LGA    T     255      -       -           -
LGA    G     256      -       -           -
LGA    T     257      -       -           -
LGA    Y     258      -       -           -
LGA    R     259      -       -           -
LGA    G     260      -       -           -
LGA    A     261      -       -           -
LGA    G     262      -       -           -
LGA    L     263      -       -           -
LGA    E     264      -       -           -
LGA    G     265      -       -           -
LGA    F     266      -       -           -
LGA    A     267      -       -           -
LGA    L     268      Y     254          5.117
LGA    N     269      T     255          2.679
LGA    V     270      G     256          3.045
LGA    K     271      -       -           -
LGA    G     272      -       -           -
LGA    A     273      T     257          2.381
LGA    Y     274      Y     258          2.655
LGA    I     275      R     259           #
LGA    I     276      G     260           #
LGA    -       -      A     261           -
LGA    -       -      G     262           -
LGA    -       -      L     263           -
LGA    -       -      E     264           -
LGA    G     277      G     265           #
LGA    N     278      F     266          4.446
LGA    -       -      A     267           -
LGA    -       -      L     268           -
LGA    -       -      N     269           -
LGA    -       -      V     270           -
LGA    -       -      K     271           -
LGA    -       -      G     272           -
LGA    -       -      A     273           -
LGA    -       -      Y     274           -
LGA    -       -      I     275           -
LGA    -       -      I     276           -
LGA    -       -      G     277           -
LGA    I     279      N     278          4.454
LGA    D     280      I     279          4.278
LGA    H     281      -       -           -
LGA    L     282      D     280          3.051
LGA    P     283      H     281           -
LGA    P     284      L     282           -
LGA    -       -      P     283           -
LGA    E     285      P     284          3.539
LGA    Q     286      E     285          3.299
LGA    -       -      Q     286           -
LGA    L     287      L     287          0.832
LGA    K     288      K     288          0.881
LGA    I     289      I     289          3.090
LGA    L     290      L     290          3.407
LGA    K     291      K     291          3.376
LGA    P     292      P     292          2.334
LGA    G     293      G     293          1.337
LGA    D     294      D     294          0.633
LGA    K     295      K     295          0.824
LGA    I     296      I     296          3.191
LGA    T     297      T     297          4.859
LGA    F     298      F     298           #
LGA    T     299      T     299           #

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)   81   81    5.0     37    3.30    32.43     27.326     1.089

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.940189 * X  +  -0.163344 * Y  +  -0.298936 * Z  +  19.082323
  Y_new =   0.319833 * X  +  -0.725350 * Y  +  -0.609568 * Z  +  60.656071
  Z_new =  -0.117264 * X  +  -0.668719 * Y  +   0.734210 * Z  +  80.749458 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.738751    2.402842  [ DEG:   -42.3273    137.6727 ]
  Theta =   0.117534    3.024058  [ DEG:     6.7342    173.2658 ]
  Phi   =   2.813693   -0.327899  [ DEG:   161.2128    -18.7873 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0386TS599_5-D2                               
REMARK     2: T0386_D2.pdb                                  
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0386TS599_5-D2.T0386_D2.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:   81   81   5.0   37   3.30   32.43  27.326
REMARK  ---------------------------------------------------------- 
MOLECULE T0386TS599_5-D2
PFRMAT TS                                                                       
TARGET T0386                                                                    
MODEL  5                                                                        
PARENT N/A                                                                      
ATOM    219  CA  ASN   219      25.139  79.882  61.099  1.00  0.00              
ATOM    220  CA  PRO   220      27.665  77.176  62.109  1.00  0.00              
ATOM    221  CA  GLU   221      27.183  77.512  65.831  1.00  0.00              
ATOM    222  CA  LYS   222      23.358  77.259  65.668  1.00  0.00              
ATOM    223  CA  ILE   223      23.737  74.153  63.457  1.00  0.00              
ATOM    224  CA  ARG   224      26.353  72.247  65.504  1.00  0.00              
ATOM    225  CA  LEU   225      24.393  72.856  68.730  1.00  0.00              
ATOM    226  CA  LEU   226      21.021  71.825  67.290  1.00  0.00              
ATOM    227  CA  LYS   227      22.672  68.663  65.955  1.00  0.00              
ATOM    228  CA  GLU   228      24.081  67.846  69.425  1.00  0.00              
ATOM    229  CA  PHE   229      20.651  68.392  71.016  1.00  0.00              
ATOM    230  CA  MET   230      19.016  66.163  68.432  1.00  0.00              
ATOM    231  CA  HIS   231      21.620  63.416  69.059  1.00  0.00              
ATOM    232  CA  THR   232      21.080  63.677  72.793  1.00  0.00              
ATOM    233  CA  MET   233      17.290  63.426  72.329  1.00  0.00              
ATOM    234  CA  LYS   234      17.827  60.326  70.203  1.00  0.00              
ATOM    235  CA  ASN   235      20.069  58.707  72.824  1.00  0.00              
ATOM    236  CA  THR   236      17.568  59.414  75.574  1.00  0.00              
ATOM    237  CA  GLY   237      14.784  57.933  73.509  1.00  0.00              
ATOM    238  CA  ARG   238      16.793  54.764  72.886  1.00  0.00              
ATOM    239  CA  ASN   239      17.723  54.349  76.540  1.00  0.00              
ATOM    240  CA  VAL   240      14.177  54.895  77.735  1.00  0.00              
ATOM    241  CA  ASN   241      12.774  52.395  75.287  1.00  0.00              
ATOM    242  CA  ASP   242      15.287  49.736  76.242  1.00  0.00              
ATOM    243  CA  ARG   243      15.212  49.355  79.857  1.00  0.00              
ATOM    244  CA  PRO   244      15.279  51.366  83.037  1.00  0.00              
ATOM    245  CA  VAL   245      18.233  51.239  85.366  1.00  0.00              
ATOM    246  CA  MET   246      17.785  51.771  89.069  1.00  0.00              
ATOM    247  CA  VAL   247      20.622  53.209  91.259  1.00  0.00              
ATOM    248  CA  ALA   248      20.197  53.444  95.008  1.00  0.00              
ATOM    249  CA  LYS   249      21.382  55.980  97.563  1.00  0.00              
ATOM    250  CA  GLU   250      24.068  53.769  98.992  1.00  0.00              
ATOM    251  CA  GLY   251      25.707  53.034  95.676  1.00  0.00              
ATOM    252  CA  GLU   252      23.975  49.792  94.800  1.00  0.00              
ATOM    253  CA  THR   253      23.590  49.260  91.160  1.00  0.00              
ATOM    254  CA  TYR   254      20.329  47.498  90.131  1.00  0.00              
ATOM    255  CA  THR   255      19.433  46.572  86.656  1.00  0.00              
ATOM    256  CA  GLY   256      15.704  46.751  86.430  1.00  0.00              
ATOM    257  CA  THR   257      14.765  46.280  82.816  1.00  0.00              
ATOM    258  CA  TYR   258      11.780  48.575  82.219  1.00  0.00              
ATOM    259  CA  ARG   259      10.083  47.944  78.882  1.00  0.00              
ATOM    260  CA  GLY   260       8.765  51.434  78.016  1.00  0.00              
ATOM    261  CA  ALA   261       7.614  52.683  81.398  1.00  0.00              
ATOM    262  CA  GLY   262       9.048  56.113  81.867  1.00  0.00              
ATOM    263  CA  LEU   263       8.187  57.828  85.083  1.00  0.00              
ATOM    264  CA  GLU   264       9.064  55.335  87.743  1.00  0.00              
ATOM    265  CA  GLY   265      12.338  54.240  86.226  1.00  0.00              
ATOM    266  CA  PHE   266      15.601  55.700  87.610  1.00  0.00              
ATOM    267  CA  ALA   267      18.599  55.839  85.341  1.00  0.00              
ATOM    268  CA  LEU   268      22.035  56.157  86.782  1.00  0.00              
ATOM    269  CA  ASN   269      24.917  56.757  84.531  1.00  0.00              
ATOM    270  CA  VAL   270      28.398  56.842  85.901  1.00  0.00              
ATOM    271  CA  LYS   271      31.188  58.621  84.115  1.00  0.00              
ATOM    272  CA  GLY   272      30.733  62.395  84.120  1.00  0.00              
ATOM    273  CA  ALA   273      27.862  62.027  86.518  1.00  0.00              
ATOM    274  CA  TYR   274      24.402  61.737  85.115  1.00  0.00              
ATOM    275  CA  ILE   275      21.379  61.035  87.199  1.00  0.00              
ATOM    276  CA  ILE   276      18.160  60.623  85.527  1.00  0.00              
ATOM    277  CA  GLY   277      15.027  60.633  87.557  1.00  0.00              
ATOM    278  CA  ASN   278      11.728  60.058  85.887  1.00  0.00              
ATOM    279  CA  ILE   279       9.922  63.195  86.848  1.00  0.00              
ATOM    280  CA  ASP   280       6.473  62.181  87.610  1.00  0.00              
ATOM    281  CA  HIS   281       7.197  59.359  89.967  1.00  0.00              
ATOM    282  CA  LEU   282       9.994  60.649  92.077  1.00  0.00              
ATOM    283  CA  PRO   283       9.294  61.151  95.735  1.00  0.00              
ATOM    284  CA  PRO   284      11.023  64.137  97.373  1.00  0.00              
ATOM    285  CA  GLU   285      13.140  61.751  99.390  1.00  0.00              
ATOM    286  CA  GLN   286      14.388  59.999  96.242  1.00  0.00              
ATOM    287  CA  LEU   287      15.128  63.206  94.331  1.00  0.00              
ATOM    288  CA  LYS   288      17.064  64.491  97.327  1.00  0.00              
ATOM    289  CA  ILE   289      19.126  61.295  97.654  1.00  0.00              
ATOM    290  CA  LEU   290      20.167  61.155  93.993  1.00  0.00              
ATOM    291  CA  LYS   291      21.126  64.669  92.882  1.00  0.00              
ATOM    292  CA  PRO   292      22.043  66.187  89.597  1.00  0.00              
ATOM    293  CA  GLY   293      25.655  65.453  88.694  1.00  0.00              
ATOM    294  CA  ASP   294      25.872  62.316  90.893  1.00  0.00              
ATOM    295  CA  LYS   295      27.225  59.158  89.437  1.00  0.00              
ATOM    296  CA  ILE   296      25.610  55.712  90.124  1.00  0.00              
ATOM    297  CA  THR   297      26.914  52.796  87.814  1.00  0.00              
ATOM    298  CA  PHE   298      24.106  50.017  86.641  1.00  0.00              
ATOM    299  CA  THR   299      24.910  46.375  86.330  1.00  0.00              
TER                                                                             
END
