
PFRMAT TS
TARGET T0312
AUTHOR SAM_T06_server
REMARK   6 
REMARK   6 T0312 model 3 Fri Jun  2 15:28:06 2006
METHOD The SAM-T06 server uses methods similar to SAM_T04 in CASP6 and
METHOD the SAM-T02 method in CASP5.
METHOD 
METHOD We start with a fully automated method:
METHOD    
METHOD     Use the SAM-T2K and SAM-T04 methods for finding homologs of the
METHOD       target and aligning them.
METHOD 
METHOD     Make local structure predictions using neural nets and the
METHOD       multiple alignments.  Different neural nets are used for the
METHOD       SAM-T2K alignments and the SAM-T04 alignments.
METHOD       We currently use 8 local-structure alphabets: 
METHOD 	DSSP
METHOD 	STRIDE
METHOD 	STR2	an extended version of DSSP that splits the beta strands
METHOD 		into multiple classes (parallel/antiparallel/mixed,
METHOD 					edge/center)
METHOD 	ALPHA	an discretization of the alpha torsion angle:
METHOD 		CA(i-i), CA(i), CA(i+1), CA(i+2)
METHOD 	BYS	a discretization of Ramachandran plots, due to Bystroff
METHOD 	CB_burial_14_7	a 7-state discretization of the number of C_beta
METHOD 		atoms in a 14 Angstrom radius sphere around the C_beta.
METHOD 	near-backbone-11 an 11-state discretization of the number of
METHOD 	      residues (represented by near-backbone points) in a 
METHOD 	      9.65 Angstrom radius sphere around the sidechain proxy
METHOD 	      spot for the residue.
METHOD 	DSSP_EHL2	CASP's collapse of the DSSP alphabet
METHOD 			DSSP_EHL2 is not predicted directly by a
METHOD 			neural net, but is computed as a weighted
METHOD 			average of the other backbone alphabet predictions. 
METHOD     
METHOD     We make 2-track HMMs with each alphabet (1.0 amino acid + 0.3 local structure)
METHOD       and use them to score a template library of 6400 (t04) or 9900 (t2k) templates
METHOD       We also used a single-track HMM to score not just the template
METHOD       library, but a non-redundant copy of the entire PDB.
METHOD 
METHOD     We also made a few 3-track HMMs (AA, str2, CB_burial_14_7 and 
METHOD       AA, str2, near-backbone-11) for finding and aligning more remote
METHOD       homologs.
METHOD     
METHOD     One-track HMMs built from the template library multiple alignments
METHOD        were used to score the target sequence (for early targets, only
METHOD        t2k template library was searched this way).
METHOD 
METHOD     All the logs of e-values were combined in a weighted average (with
METHOD        rather arbitrary weights, since we did not have time to
METHOD        optimize them), and the best templates ranked.  Ranking was
METHOD        separate for predictions from the t2k and t04 multiple alignments.
METHOD     
METHOD     Alignments of the target to the top templates were made using
METHOD       several different alignment methods (mainly using the SAM hmmscore
METHOD       program, but a few alignments were made with Bob Edgar's MUSCLE
METHOD       profile-profile aligner).
METHOD 
METHOD     Generate fragments (short 9-residue alignments for each position)
METHOD       using SAM's "fragfinder" program and the 3-track HMM.
METHOD 
METHOD     Then the "undertaker" program (named because it optimizes burial)
METHOD       is used to try to combine the alignments and the fragments into
METHOD       a consistent 3D model.  No single alignment or parent template
METHOD       was used, though in many cases one had much more influence than
METHOD       the others.  The alignment scores were not passed to undertaker,
METHOD       but were used only to pick the set of alignments and fragments
METHOD       that undertaker would see.  Helix and strand constraints
METHOD       generated from the secondary-structure predictions are passed to
METHOD       undertaker to use in the cost function.
METHOD 
METHOD     One important change in this server over previous methods is that
METHOD     sheet constraints are extracted from the top few alignments and
METHOD     passed to undertaker. 
METHOD -------------
MODEL  3
PARENT N/A
ATOM      2  N   GLU     5       5.181  -1.605   0.746  1.00  0.00
ATOM      3  CA  GLU     5       5.588  -0.357   1.364  1.00  0.00
ATOM      4  CB  GLU     5       4.661   0.781   0.934  1.00  0.00
ATOM      5  CG  GLU     5       5.069   2.147   1.460  1.00  0.00
ATOM      6  CD  GLU     5       4.160   3.256   0.971  1.00  0.00
ATOM      7  OE1 GLU     5       3.227   2.960   0.194  1.00  0.00
ATOM      8  OE2 GLU     5       4.378   4.421   1.364  1.00  0.00
ATOM      9  O   GLU     5       4.510  -1.054   3.393  1.00  0.00
ATOM     10  C   GLU     5       5.508  -0.558   2.870  1.00  0.00
ATOM     11  N   PHE     6       6.592  -0.211   3.546  1.00  0.00
ATOM     12  CA  PHE     6       6.719  -0.400   4.986  1.00  0.00
ATOM     13  CB  PHE     6       7.995  -1.176   5.313  1.00  0.00
ATOM     14  CG  PHE     6       8.009  -2.578   4.774  1.00  0.00
ATOM     15  CD1 PHE     6       8.669  -2.873   3.593  1.00  0.00
ATOM     16  CD2 PHE     6       7.362  -3.599   5.446  1.00  0.00
ATOM     17  CE1 PHE     6       8.681  -4.163   3.096  1.00  0.00
ATOM     18  CE2 PHE     6       7.374  -4.889   4.948  1.00  0.00
ATOM     19  CZ  PHE     6       8.028  -5.172   3.779  1.00  0.00
ATOM     20  O   PHE     6       6.946   1.979   5.172  1.00  0.00
ATOM     21  C   PHE     6       6.782   0.908   5.758  1.00  0.00
ATOM     22  N   GLU     7       6.635   0.835   7.092  1.00  0.00
ATOM     23  CA  GLU     7       6.689   2.028   7.939  1.00  0.00
ATOM     24  CB  GLU     7       6.479   1.651   9.407  1.00  0.00
ATOM     25  CG  GLU     7       5.066   1.198   9.735  1.00  0.00
ATOM     26  CD  GLU     7       4.907   0.790  11.187  1.00  0.00
ATOM     27  OE1 GLU     7       5.906   0.854  11.935  1.00  0.00
ATOM     28  OE2 GLU     7       3.785   0.408  11.578  1.00  0.00
ATOM     29  O   GLU     7       9.041   2.086   7.409  1.00  0.00
ATOM     30  C   GLU     7       8.049   2.713   7.802  1.00  0.00
ATOM     31  N   VAL     8       8.087   3.991   8.167  1.00  0.00
ATOM     32  CA  VAL     8       9.297   4.809   8.099  1.00  0.00
ATOM     33  CB  VAL     8      10.432   4.209   8.950  1.00  0.00
ATOM     34  CG1 VAL     8      11.560   5.215   9.119  1.00  0.00
ATOM     35  CG2 VAL     8       9.919   3.828  10.330  1.00  0.00
ATOM     36  O   VAL     8      11.022   4.865   6.423  1.00  0.00
ATOM     37  C   VAL     8       9.816   4.927   6.667  1.00  0.00
ATOM     38  N   GLY     9       8.879   5.049   5.728  1.00  0.00
ATOM     39  CA  GLY     9       9.171   5.225   4.305  1.00  0.00
ATOM     40  O   GLY     9      11.015   4.581   2.888  1.00  0.00
ATOM     41  C   GLY     9      10.154   4.218   3.694  1.00  0.00
ATOM     42  N   LYS    10      10.004   2.955   4.073  1.00  0.00
ATOM     43  CA  LYS    10      10.855   1.882   3.572  1.00  0.00
ATOM     44  CB  LYS    10      11.375   1.027   4.731  1.00  0.00
ATOM     45  CG  LYS    10      12.212   1.794   5.741  1.00  0.00
ATOM     46  CD  LYS    10      12.756   0.873   6.822  1.00  0.00
ATOM     47  CE  LYS    10      13.665   1.623   7.781  1.00  0.00
ATOM     48  NZ  LYS    10      14.205   0.732   8.845  1.00  0.00
ATOM     49  O   LYS    10       8.798   1.167   2.551  1.00  0.00
ATOM     50  C   LYS    10      10.023   1.016   2.629  1.00  0.00
ATOM     51  N   GLY    11      10.691   0.115   1.916  1.00  0.00
ATOM     52  CA  GLY    11      10.002  -0.765   0.975  1.00  0.00
ATOM     53  O   GLY    11      12.009  -2.089   1.024  1.00  0.00
ATOM     54  C   GLY    11      10.809  -2.035   0.743  1.00  0.00
ATOM     55  N   PHE    12      10.140  -3.058   0.223  1.00  0.00
ATOM     56  CA  PHE    12      10.800  -4.307  -0.083  1.00  0.00
ATOM     57  CB  PHE    12      10.847  -5.205   1.155  1.00  0.00
ATOM     58  CG  PHE    12      11.622  -4.620   2.301  1.00  0.00
ATOM     59  CD1 PHE    12      10.975  -3.932   3.312  1.00  0.00
ATOM     60  CD2 PHE    12      12.997  -4.757   2.367  1.00  0.00
ATOM     61  CE1 PHE    12      11.687  -3.393   4.366  1.00  0.00
ATOM     62  CE2 PHE    12      13.709  -4.218   3.421  1.00  0.00
ATOM     63  CZ  PHE    12      13.061  -3.539   4.419  1.00  0.00
ATOM     64  O   PHE    12       8.835  -4.666  -1.412  1.00  0.00
ATOM     65  C   PHE    12      10.003  -4.985  -1.190  1.00  0.00
ATOM     66  N   LEU    13      10.689  -5.793  -1.982  1.00  0.00
ATOM     67  CA  LEU    13      10.025  -6.566  -3.021  1.00  0.00
ATOM     68  CB  LEU    13      10.539  -6.158  -4.404  1.00  0.00
ATOM     69  CG  LEU    13       9.972  -6.935  -5.594  1.00  0.00
ATOM     70  CD1 LEU    13       8.476  -6.696  -5.728  1.00  0.00
ATOM     71  CD2 LEU    13      10.641  -6.496  -6.889  1.00  0.00
ATOM     72  O   LEU    13      11.594  -8.286  -2.485  1.00  0.00
ATOM     73  C   LEU    13      10.412  -7.986  -2.646  1.00  0.00
ATOM     74  N   LEU    14       9.409  -8.829  -2.423  1.00  0.00
ATOM     75  CA  LEU    14       9.662 -10.208  -2.023  1.00  0.00
ATOM     76  CB  LEU    14       8.911 -10.537  -0.733  1.00  0.00
ATOM     77  CG  LEU    14       9.240  -9.671   0.485  1.00  0.00
ATOM     78  CD1 LEU    14       8.363 -10.051   1.669  1.00  0.00
ATOM     79  CD2 LEU    14      10.693  -9.847   0.892  1.00  0.00
ATOM     80  O   LEU    14       8.318 -10.980  -3.850  1.00  0.00
ATOM     81  C   LEU    14       9.226 -11.231  -3.063  1.00  0.00
ATOM     82  N   ARG    15       9.923 -12.364  -3.074  1.00  0.00
ATOM     83  CA  ARG    15       9.614 -13.468  -3.978  1.00  0.00
ATOM     84  CB  ARG    15      10.850 -14.341  -4.201  1.00  0.00
ATOM     85  CG  ARG    15      11.977 -13.644  -4.947  1.00  0.00
ATOM     86  CD  ARG    15      13.179 -14.559  -5.112  1.00  0.00
ATOM     87  NE  ARG    15      13.834 -14.836  -3.836  1.00  0.00
ATOM     88  CZ  ARG    15      14.746 -15.784  -3.655  1.00  0.00
ATOM     89  NH1 ARG    15      15.289 -15.964  -2.458  1.00  0.00
ATOM     90  NH2 ARG    15      15.115 -16.553  -4.670  1.00  0.00
ATOM     91  O   ARG    15       8.500 -14.486  -2.119  1.00  0.00
ATOM     92  C   ARG    15       8.509 -14.287  -3.337  1.00  0.00
ATOM     93  N   LEU    16       7.577 -14.750  -4.156  1.00  0.00
ATOM     94  CA  LEU    16       6.481 -15.564  -3.662  1.00  0.00
ATOM     95  CB  LEU    16       5.137 -14.953  -4.061  1.00  0.00
ATOM     96  CG  LEU    16       3.888 -15.741  -3.659  1.00  0.00
ATOM     97  CD1 LEU    16       3.766 -15.819  -2.145  1.00  0.00
ATOM     98  CD2 LEU    16       2.634 -15.075  -4.203  1.00  0.00
ATOM     99  O   LEU    16       6.672 -17.129  -5.467  1.00  0.00
ATOM    100  C   LEU    16       6.584 -16.959  -4.250  1.00  0.00
ATOM    101  N   ASP    17       6.637 -17.951  -3.372  1.00  0.00
ATOM    102  CA  ASP    17       6.680 -19.338  -3.802  1.00  0.00
ATOM    103  CB  ASP    17       7.858 -20.063  -3.150  1.00  0.00
ATOM    104  CG  ASP    17       9.200 -19.516  -3.596  1.00  0.00
ATOM    105  OD1 ASP    17       9.434 -19.442  -4.821  1.00  0.00
ATOM    106  OD2 ASP    17      10.017 -19.161  -2.721  1.00  0.00
ATOM    107  O   ASP    17       4.877 -19.708  -2.264  1.00  0.00
ATOM    108  C   ASP    17       5.362 -19.966  -3.370  1.00  0.00
ATOM    109  N   TYR    18       4.741 -20.705  -4.285  1.00  0.00
ATOM    110  CA  TYR    18       3.464 -21.361  -4.019  1.00  0.00
ATOM    111  CB  TYR    18       3.171 -22.417  -5.086  1.00  0.00
ATOM    112  CG  TYR    18       1.875 -23.164  -4.869  1.00  0.00
ATOM    113  CD1 TYR    18       0.653 -22.562  -5.145  1.00  0.00
ATOM    114  CD2 TYR    18       1.876 -24.467  -4.388  1.00  0.00
ATOM    115  CE1 TYR    18      -0.537 -23.238  -4.949  1.00  0.00
ATOM    116  CE2 TYR    18       0.696 -25.157  -4.187  1.00  0.00
ATOM    117  CZ  TYR    18      -0.518 -24.530  -4.473  1.00  0.00
ATOM    118  OH  TYR    18      -1.700 -25.204  -4.278  1.00  0.00
ATOM    119  O   TYR    18       4.418 -22.720  -2.277  1.00  0.00
ATOM    120  C   TYR    18       3.453 -22.058  -2.660  1.00  0.00
ATOM    121  N   GLY    19       2.376 -21.845  -1.914  1.00  0.00
ATOM    122  CA  GLY    19       2.253 -22.435  -0.597  1.00  0.00
ATOM    123  O   GLY    19       1.929 -21.595   1.606  1.00  0.00
ATOM    124  C   GLY    19       2.480 -21.438   0.524  1.00  0.00
ATOM    125  N   LYS    20       3.292 -20.410   0.281  1.00  0.00
ATOM    126  CA  LYS    20       3.565 -19.406   1.312  1.00  0.00
ATOM    127  CB  LYS    20       4.694 -18.475   0.866  1.00  0.00
ATOM    128  CG  LYS    20       6.056 -19.144   0.784  1.00  0.00
ATOM    129  CD  LYS    20       7.134 -18.152   0.378  1.00  0.00
ATOM    130  CE  LYS    20       8.488 -18.832   0.249  1.00  0.00
ATOM    131  NZ  LYS    20       9.560 -17.868  -0.128  1.00  0.00
ATOM    132  O   LYS    20       1.558 -18.221   0.742  1.00  0.00
ATOM    133  C   LYS    20       2.358 -18.533   1.623  1.00  0.00
ATOM    134  N   ASP    21       2.202 -18.176   2.892  1.00  0.00
ATOM    135  CA  ASP    21       1.140 -17.259   3.284  1.00  0.00
ATOM    136  CB  ASP    21       0.615 -17.610   4.676  1.00  0.00
ATOM    137  CG  ASP    21      -0.032 -18.980   4.727  1.00  0.00
ATOM    138  OD1 ASP    21      -0.855 -19.281   3.837  1.00  0.00
ATOM    139  OD2 ASP    21       0.286 -19.754   5.655  1.00  0.00
ATOM    140  O   ASP    21       3.050 -15.792   3.204  1.00  0.00
ATOM    141  C   ASP    21       1.820 -15.880   3.262  1.00  0.00
ATOM    142  N   LEU    22       1.027 -14.816   3.311  1.00  0.00
ATOM    143  CA  LEU    22       1.557 -13.454   3.303  1.00  0.00
ATOM    144  CB  LEU    22       0.434 -12.440   3.530  1.00  0.00
ATOM    145  CG  LEU    22      -0.570 -12.274   2.387  1.00  0.00
ATOM    146  CD1 LEU    22      -1.717 -11.367   2.807  1.00  0.00
ATOM    147  CD2 LEU    22       0.101 -11.656   1.168  1.00  0.00
ATOM    148  O   LEU    22       3.660 -12.678   4.184  1.00  0.00
ATOM    149  C   LEU    22       2.601 -13.267   4.409  1.00  0.00
ATOM    150  N   VAL    23       2.299 -13.792   5.593  1.00  0.00
ATOM    151  CA  VAL    23       3.201 -13.707   6.738  1.00  0.00
ATOM    152  CB  VAL    23       2.621 -14.430   7.967  1.00  0.00
ATOM    153  CG1 VAL    23       3.656 -14.500   9.081  1.00  0.00
ATOM    154  CG2 VAL    23       1.400 -13.691   8.494  1.00  0.00
ATOM    155  O   VAL    23       5.598 -13.841   6.803  1.00  0.00
ATOM    156  C   VAL    23       4.549 -14.349   6.409  1.00  0.00
ATOM    157  N   ARG    24       4.509 -15.461   5.679  1.00  0.00
ATOM    158  CA  ARG    24       5.728 -16.164   5.289  1.00  0.00
ATOM    159  CB  ARG    24       5.386 -17.470   4.569  1.00  0.00
ATOM    160  CG  ARG    24       4.803 -18.543   5.473  1.00  0.00
ATOM    161  CD  ARG    24       4.443 -19.792   4.687  1.00  0.00
ATOM    162  NE  ARG    24       3.855 -20.825   5.537  1.00  0.00
ATOM    163  CZ  ARG    24       3.434 -22.006   5.096  1.00  0.00
ATOM    164  NH1 ARG    24       2.913 -22.884   5.943  1.00  0.00
ATOM    165  NH2 ARG    24       3.533 -22.307   3.807  1.00  0.00
ATOM    166  O   ARG    24       7.853 -15.362   4.561  1.00  0.00
ATOM    167  C   ARG    24       6.648 -15.391   4.347  1.00  0.00
ATOM    168  N   GLN    25       6.074 -14.777   3.317  1.00  0.00
ATOM    169  CA  GLN    25       6.853 -14.018   2.340  1.00  0.00
ATOM    170  CB  GLN    25       5.972 -13.595   1.164  1.00  0.00
ATOM    171  CG  GLN    25       6.724 -12.893   0.045  1.00  0.00
ATOM    172  CD  GLN    25       5.845 -12.602  -1.155  1.00  0.00
ATOM    173  OE1 GLN    25       4.671 -12.971  -1.181  1.00  0.00
ATOM    174  NE2 GLN    25       6.413 -11.936  -2.156  1.00  0.00
ATOM    175  O   GLN    25       8.542 -12.327   2.473  1.00  0.00
ATOM    176  C   GLN    25       7.474 -12.741   2.902  1.00  0.00
ATOM    177  N   ILE    26       6.840 -12.202   3.944  1.00  0.00
ATOM    178  CA  ILE    26       7.300 -10.961   4.573  1.00  0.00
ATOM    179  CB  ILE    26       6.123 -10.023   4.899  1.00  0.00
ATOM    180  CG1 ILE    26       5.192 -10.673   5.925  1.00  0.00
ATOM    181  CG2 ILE    26       5.320  -9.720   3.643  1.00  0.00
ATOM    182  CD1 ILE    26       4.131  -9.738   6.465  1.00  0.00
ATOM    183  O   ILE    26       8.562 -10.075   6.396  1.00  0.00
ATOM    184  C   ILE    26       8.057 -11.076   5.890  1.00  0.00
ATOM    185  N   GLU    27       8.154 -12.287   6.427  1.00  0.00
ATOM    186  CA  GLU    27       8.833 -12.515   7.701  1.00  0.00
ATOM    187  CB  GLU    27       9.002 -14.014   7.957  1.00  0.00
ATOM    188  CG  GLU    27       9.662 -14.346   9.285  1.00  0.00
ATOM    189  CD  GLU    27       9.784 -15.839   9.519  1.00  0.00
ATOM    190  OE1 GLU    27       9.334 -16.615   8.648  1.00  0.00
ATOM    191  OE2 GLU    27      10.329 -16.235  10.570  1.00  0.00
ATOM    192  O   GLU    27      10.497 -11.144   8.737  1.00  0.00
ATOM    193  C   GLU    27      10.230 -11.913   7.816  1.00  0.00
ATOM    194  N   GLU    28      11.117 -12.264   6.888  1.00  0.00
ATOM    195  CA  GLU    28      12.481 -11.741   6.905  1.00  0.00
ATOM    196  CB  GLU    28      13.301 -12.344   5.764  1.00  0.00
ATOM    197  CG  GLU    28      14.751 -11.888   5.734  1.00  0.00
ATOM    198  CD  GLU    28      15.539 -12.532   4.610  1.00  0.00
ATOM    199  OE1 GLU    28      14.956 -13.346   3.863  1.00  0.00
ATOM    200  OE2 GLU    28      16.743 -12.223   4.476  1.00  0.00
ATOM    201  O   GLU    28      13.240  -9.555   7.522  1.00  0.00
ATOM    202  C   GLU    28      12.556 -10.220   6.748  1.00  0.00
ATOM    203  N   PHE    29      11.823  -9.673   5.783  1.00  0.00
ATOM    204  CA  PHE    29      11.811  -8.225   5.544  1.00  0.00
ATOM    205  CB  PHE    29      10.837  -7.876   4.418  1.00  0.00
ATOM    206  CG  PHE    29      11.373  -8.153   3.043  1.00  0.00
ATOM    207  CD1 PHE    29      10.989  -9.287   2.349  1.00  0.00
ATOM    208  CD2 PHE    29      12.263  -7.279   2.443  1.00  0.00
ATOM    209  CE1 PHE    29      11.484  -9.542   1.084  1.00  0.00
ATOM    210  CE2 PHE    29      12.757  -7.533   1.178  1.00  0.00
ATOM    211  CZ  PHE    29      12.371  -8.659   0.499  1.00  0.00
ATOM    212  O   PHE    29      11.897  -6.349   7.054  1.00  0.00
ATOM    213  C   PHE    29      11.384  -7.437   6.785  1.00  0.00
ATOM    214  N   LEU    30      10.436  -7.987   7.539  1.00  0.00
ATOM    215  CA  LEU    30       9.972  -7.330   8.752  1.00  0.00
ATOM    216  CB  LEU    30       8.657  -7.949   9.228  1.00  0.00
ATOM    217  CG  LEU    30       7.431  -7.694   8.350  1.00  0.00
ATOM    218  CD1 LEU    30       6.242  -8.509   8.837  1.00  0.00
ATOM    219  CD2 LEU    30       7.044  -6.224   8.383  1.00  0.00
ATOM    220  O   LEU    30      11.287  -6.510  10.592  1.00  0.00
ATOM    221  C   LEU    30      11.001  -7.469   9.878  1.00  0.00
ATOM    222  N   GLU    31      11.567  -8.664  10.009  1.00  0.00
ATOM    223  CA  GLU    31      12.554  -8.965  11.045  1.00  0.00
ATOM    224  CB  GLU    31      13.011 -10.422  10.944  1.00  0.00
ATOM    225  CG  GLU    31      14.007 -10.836  12.015  1.00  0.00
ATOM    226  CD  GLU    31      14.410 -12.293  11.904  1.00  0.00
ATOM    227  OE1 GLU    31      13.899 -12.983  10.997  1.00  0.00
ATOM    228  OE2 GLU    31      15.236 -12.745  12.725  1.00  0.00
ATOM    229  O   GLU    31      14.289  -7.604  11.992  1.00  0.00
ATOM    230  C   GLU    31      13.821  -8.105  10.972  1.00  0.00
ATOM    231  N   GLU    32      14.380  -7.941   9.775  1.00  0.00
ATOM    232  CA  GLU    32      15.594  -7.141   9.622  1.00  0.00
ATOM    233  CB  GLU    32      16.172  -7.311   8.215  1.00  0.00
ATOM    234  CG  GLU    32      16.731  -8.696   7.937  1.00  0.00
ATOM    235  CD  GLU    32      17.196  -8.861   6.503  1.00  0.00
ATOM    236  OE1 GLU    32      17.058  -7.897   5.720  1.00  0.00
ATOM    237  OE2 GLU    32      17.699  -9.953   6.163  1.00  0.00
ATOM    238  O   GLU    32      16.318  -4.870   9.832  1.00  0.00
ATOM    239  C   GLU    32      15.363  -5.647   9.830  1.00  0.00
ATOM    240  N   LYS    33      14.095  -5.248   9.965  1.00  0.00
ATOM    241  CA  LYS    33      13.742  -3.845  10.200  1.00  0.00
ATOM    242  CB  LYS    33      12.707  -3.374   9.176  1.00  0.00
ATOM    243  CG  LYS    33      13.158  -3.507   7.730  1.00  0.00
ATOM    244  CD  LYS    33      14.358  -2.618   7.444  1.00  0.00
ATOM    245  CE  LYS    33      14.837  -2.783   6.010  1.00  0.00
ATOM    246  NZ  LYS    33      16.094  -2.028   5.754  1.00  0.00
ATOM    247  O   LYS    33      12.665  -2.594  11.957  1.00  0.00
ATOM    248  C   LYS    33      13.151  -3.674  11.602  1.00  0.00
ATOM    249  N   GLY    34      13.177  -4.757  12.378  1.00  0.00
ATOM    250  CA  GLY    34      12.659  -4.738  13.735  1.00  0.00
ATOM    251  O   GLY    34      10.659  -4.065  14.842  1.00  0.00
ATOM    252  C   GLY    34      11.156  -4.573  13.840  1.00  0.00
ATOM    253  N   ILE    35      10.432  -5.004  12.811  1.00  0.00
ATOM    254  CA  ILE    35       8.977  -4.895  12.789  1.00  0.00
ATOM    255  CB  ILE    35       8.464  -4.459  11.404  1.00  0.00
ATOM    256  CG1 ILE    35       8.993  -3.067  11.054  1.00  0.00
ATOM    257  CG2 ILE    35       6.944  -4.415  11.389  1.00  0.00
ATOM    258  CD1 ILE    35       8.757  -2.668   9.614  1.00  0.00
ATOM    259  O   ILE    35       8.837  -7.288  12.743  1.00  0.00
ATOM    260  C   ILE    35       8.331  -6.230  13.123  1.00  0.00
ATOM    261  N   HIS    36       7.207  -6.176  13.830  1.00  0.00
ATOM    262  CA  HIS    36       6.477  -7.380  14.212  1.00  0.00
ATOM    263  CB  HIS    36       6.329  -7.457  15.733  1.00  0.00
ATOM    264  CG  HIS    36       7.632  -7.427  16.469  1.00  0.00
ATOM    265  CD2 HIS    36       8.374  -6.428  17.226  1.00  0.00
ATOM    266  ND1 HIS    36       8.464  -8.522  16.555  1.00  0.00
ATOM    267  CE1 HIS    36       9.551  -8.192  17.275  1.00  0.00
ATOM    268  NE2 HIS    36       9.504  -6.937  17.681  1.00  0.00
ATOM    269  O   HIS    36       4.307  -6.446  13.805  1.00  0.00
ATOM    270  C   HIS    36       5.088  -7.372  13.589  1.00  0.00
ATOM    274  N   SER    48       1.856  -6.553  15.456  1.00  0.00
ATOM    275  CA  SER    48       1.668  -5.147  15.807  1.00  0.00
ATOM    276  CB  SER    48       2.928  -4.587  16.469  1.00  0.00
ATOM    277  OG  SER    48       4.017  -4.573  15.564  1.00  0.00
ATOM    278  O   SER    48       1.270  -3.073  14.667  1.00  0.00
ATOM    279  C   SER    48       1.369  -4.298  14.577  1.00  0.00
ATOM    280  N   ALA    49       1.206  -4.961  13.433  1.00  0.00
ATOM    281  CA  ALA    49       0.936  -4.276  12.173  1.00  0.00
ATOM    282  CB  ALA    49       2.127  -4.402  11.236  1.00  0.00
ATOM    283  O   ALA    49      -0.705  -5.955  11.693  1.00  0.00
ATOM    284  C   ALA    49      -0.271  -4.832  11.443  1.00  0.00
ATOM    285  N   VAL    50      -0.784  -4.021  10.529  1.00  0.00
ATOM    286  CA  VAL    50      -1.902  -4.372   9.673  1.00  0.00
ATOM    287  CB  VAL    50      -3.073  -3.386   9.843  1.00  0.00
ATOM    288  CG1 VAL    50      -4.209  -3.742   8.895  1.00  0.00
ATOM    289  CG2 VAL    50      -3.605  -3.431  11.267  1.00  0.00
ATOM    290  O   VAL    50      -0.452  -3.484   7.984  1.00  0.00
ATOM    291  C   VAL    50      -1.326  -4.306   8.260  1.00  0.00
ATOM    292  N   ILE    51      -1.769  -5.203   7.386  1.00  0.00
ATOM    293  CA  ILE    51      -1.295  -5.207   6.009  1.00  0.00
ATOM    294  CB  ILE    51      -0.686  -6.569   5.626  1.00  0.00
ATOM    295  CG1 ILE    51       0.515  -6.887   6.519  1.00  0.00
ATOM    296  CG2 ILE    51      -0.220  -6.556   4.178  1.00  0.00
ATOM    297  CD1 ILE    51       1.032  -8.300   6.366  1.00  0.00
ATOM    298  O   ILE    51      -3.579  -5.456   5.279  1.00  0.00
ATOM    299  C   ILE    51      -2.477  -4.917   5.090  1.00  0.00
ATOM    300  N   GLY    52      -2.264  -4.002   4.148  1.00  0.00
ATOM    301  CA  GLY    52      -3.305  -3.581   3.225  1.00  0.00
ATOM    302  O   GLY    52      -1.771  -3.647   1.381  1.00  0.00
ATOM    303  C   GLY    52      -2.932  -3.762   1.769  1.00  0.00
ATOM    304  N   TYR    53      -3.955  -3.997   0.966  1.00  0.00
ATOM    305  CA  TYR    53      -3.813  -4.144  -0.470  1.00  0.00
ATOM    306  CB  TYR    53      -4.758  -5.228  -0.993  1.00  0.00
ATOM    307  CG  TYR    53      -4.681  -5.436  -2.489  1.00  0.00
ATOM    308  CD1 TYR    53      -3.625  -6.138  -3.055  1.00  0.00
ATOM    309  CD2 TYR    53      -5.667  -4.933  -3.329  1.00  0.00
ATOM    310  CE1 TYR    53      -3.547  -6.334  -4.421  1.00  0.00
ATOM    311  CE2 TYR    53      -5.604  -5.119  -4.696  1.00  0.00
ATOM    312  CZ  TYR    53      -4.533  -5.827  -5.239  1.00  0.00
ATOM    313  OH  TYR    53      -4.458  -6.020  -6.599  1.00  0.00
ATOM    314  O   TYR    53      -5.172  -2.176  -0.602  1.00  0.00
ATOM    315  C   TYR    53      -4.174  -2.765  -1.024  1.00  0.00
ATOM    316  N   TYR    54      -3.337  -2.217  -1.902  1.00  0.00
ATOM    317  CA  TYR    54      -3.616  -0.906  -2.496  1.00  0.00
ATOM    318  CB  TYR    54      -2.320  -0.245  -2.970  1.00  0.00
ATOM    319  CG  TYR    54      -1.442   0.257  -1.846  1.00  0.00
ATOM    320  CD1 TYR    54      -0.387  -0.510  -1.371  1.00  0.00
ATOM    321  CD2 TYR    54      -1.672   1.498  -1.265  1.00  0.00
ATOM    322  CE1 TYR    54       0.420  -0.059  -0.343  1.00  0.00
ATOM    323  CE2 TYR    54      -0.876   1.965  -0.237  1.00  0.00
ATOM    324  CZ  TYR    54       0.178   1.175   0.222  1.00  0.00
ATOM    325  OH  TYR    54       0.980   1.626   1.244  1.00  0.00
ATOM    326  O   TYR    54      -4.259  -1.847  -4.603  1.00  0.00
ATOM    327  C   TYR    54      -4.550  -1.079  -3.690  1.00  0.00
ATOM    328  N   ASP    55      -5.667  -0.355  -3.681  1.00  0.00
ATOM    329  CA  ASP    55      -6.651  -0.441  -4.758  1.00  0.00
ATOM    330  CB  ASP    55      -8.070  -0.321  -4.197  1.00  0.00
ATOM    331  CG  ASP    55      -9.133  -0.474  -5.268  1.00  0.00
ATOM    332  OD1 ASP    55      -8.769  -0.556  -6.459  1.00  0.00
ATOM    333  OD2 ASP    55     -10.330  -0.512  -4.914  1.00  0.00
ATOM    334  O   ASP    55      -7.034   1.753  -5.663  1.00  0.00
ATOM    335  C   ASP    55      -6.458   0.672  -5.787  1.00  0.00
ATOM    336  N   GLN    56      -5.668   0.381  -6.814  1.00  0.00
ATOM    337  CA  GLN    56      -5.363   1.340  -7.876  1.00  0.00
ATOM    338  CB  GLN    56      -4.412   0.719  -8.901  1.00  0.00
ATOM    339  CG  GLN    56      -2.997   0.507  -8.387  1.00  0.00
ATOM    340  CD  GLN    56      -2.104  -0.179  -9.400  1.00  0.00
ATOM    341  OE1 GLN    56      -2.550  -0.541 -10.490  1.00  0.00
ATOM    342  NE2 GLN    56      -0.837  -0.361  -9.045  1.00  0.00
ATOM    343  O   GLN    56      -6.601   2.984  -9.105  1.00  0.00
ATOM    344  C   GLN    56      -6.575   1.834  -8.669  1.00  0.00
ATOM    345  N   GLU    57      -7.571   0.975  -8.855  1.00  0.00
ATOM    346  CA  GLU    57      -8.776   1.351  -9.593  1.00  0.00
ATOM    347  CB  GLU    57      -9.609   0.113  -9.926  1.00  0.00
ATOM    348  CG  GLU    57      -8.961  -0.818 -10.938  1.00  0.00
ATOM    349  CD  GLU    57      -9.727  -2.115 -11.111  1.00  0.00
ATOM    350  OE1 GLU    57     -10.722  -2.318 -10.385  1.00  0.00
ATOM    351  OE2 GLU    57      -9.331  -2.928 -11.972  1.00  0.00
ATOM    352  O   GLU    57     -10.676   2.799  -9.310  1.00  0.00
ATOM    353  C   GLU    57      -9.669   2.306  -8.798  1.00  0.00
ATOM    354  N   LYS    58      -9.283   2.577  -7.552  1.00  0.00
ATOM    355  CA  LYS    58     -10.042   3.459  -6.666  1.00  0.00
ATOM    356  CB  LYS    58     -10.718   2.652  -5.557  1.00  0.00
ATOM    357  CG  LYS    58     -11.762   1.665  -6.056  1.00  0.00
ATOM    358  CD  LYS    58     -12.968   2.384  -6.640  1.00  0.00
ATOM    359  CE  LYS    58     -13.999   1.398  -7.163  1.00  0.00
ATOM    360  NZ  LYS    58     -15.176   2.088  -7.757  1.00  0.00
ATOM    361  O   LYS    58      -9.359   4.870  -4.839  1.00  0.00
ATOM    362  C   LYS    58      -9.149   4.506  -5.999  1.00  0.00
ATOM    363  N   LYS    59      -8.150   4.976  -6.741  1.00  0.00
ATOM    364  CA  LYS    59      -7.202   5.987  -6.271  1.00  0.00
ATOM    365  CB  LYS    59      -7.897   7.340  -6.108  1.00  0.00
ATOM    366  CG  LYS    59      -8.449   7.913  -7.403  1.00  0.00
ATOM    367  CD  LYS    59      -9.078   9.278  -7.179  1.00  0.00
ATOM    368  CE  LYS    59      -9.643   9.845  -8.472  1.00  0.00
ATOM    369  NZ  LYS    59     -10.346  11.139  -8.251  1.00  0.00
ATOM    370  O   LYS    59      -6.809   6.409  -3.933  1.00  0.00
ATOM    371  C   LYS    59      -6.517   5.738  -4.926  1.00  0.00
ATOM    372  N   GLU    60      -5.606   4.769  -4.910  1.00  0.00
ATOM    373  CA  GLU    60      -4.846   4.446  -3.710  1.00  0.00
ATOM    374  CB  GLU    60      -4.004   5.645  -3.271  1.00  0.00
ATOM    375  CG  GLU    60      -3.008   6.120  -4.315  1.00  0.00
ATOM    376  CD  GLU    60      -2.126   7.245  -3.809  1.00  0.00
ATOM    377  OE1 GLU    60      -2.304   7.662  -2.645  1.00  0.00
ATOM    378  OE2 GLU    60      -1.258   7.710  -4.578  1.00  0.00
ATOM    379  O   GLU    60      -4.983   4.056  -1.366  1.00  0.00
ATOM    380  C   GLU    60      -5.579   4.042  -2.444  1.00  0.00
ATOM    381  N   TYR    61      -6.861   3.698  -2.553  1.00  0.00
ATOM    382  CA  TYR    61      -7.637   3.281  -1.384  1.00  0.00
ATOM    383  CB  TYR    61      -9.107   3.084  -1.759  1.00  0.00
ATOM    384  CG  TYR    61      -9.975   2.623  -0.611  1.00  0.00
ATOM    385  CD1 TYR    61     -10.370   3.509   0.382  1.00  0.00
ATOM    386  CD2 TYR    61     -10.399   1.303  -0.526  1.00  0.00
ATOM    387  CE1 TYR    61     -11.163   3.096   1.435  1.00  0.00
ATOM    388  CE2 TYR    61     -11.194   0.872   0.520  1.00  0.00
ATOM    389  CZ  TYR    61     -11.575   1.782   1.504  1.00  0.00
ATOM    390  OH  TYR    61     -12.366   1.368   2.552  1.00  0.00
ATOM    391  O   TYR    61      -6.697   1.083  -1.646  1.00  0.00
ATOM    392  C   TYR    61      -7.065   1.958  -0.862  1.00  0.00
ATOM    396  N   LYS    63      -6.966   1.829   0.459  1.00  0.00
ATOM    397  CA  LYS    63      -6.429   0.618   1.074  1.00  0.00
ATOM    398  CB  LYS    63      -5.580   0.970   2.298  1.00  0.00
ATOM    399  CG  LYS    63      -4.313   1.744   1.972  1.00  0.00
ATOM    400  CD  LYS    63      -3.540   2.093   3.233  1.00  0.00
ATOM    401  CE  LYS    63      -2.299   2.910   2.912  1.00  0.00
ATOM    402  NZ  LYS    63      -1.552   3.292   4.142  1.00  0.00
ATOM    403  O   LYS    63      -8.522   0.053   2.107  1.00  0.00
ATOM    404  C   LYS    63      -7.502  -0.354   1.548  1.00  0.00
ATOM    405  N   LYS    64      -7.261  -1.640   1.315  1.00  0.00
ATOM    406  CA  LYS    64      -8.177  -2.701   1.721  1.00  0.00
ATOM    407  CB  LYS    64      -8.706  -3.450   0.497  1.00  0.00
ATOM    408  CG  LYS    64      -9.549  -2.599  -0.436  1.00  0.00
ATOM    409  CD  LYS    64     -10.093  -3.419  -1.594  1.00  0.00
ATOM    410  CE  LYS    64     -10.926  -2.563  -2.536  1.00  0.00
ATOM    411  NZ  LYS    64     -11.537  -3.371  -3.626  1.00  0.00
ATOM    412  O   LYS    64      -6.391  -4.233   2.192  1.00  0.00
ATOM    413  C   LYS    64      -7.391  -3.653   2.623  1.00  0.00
ATOM    414  N   GLU    65      -7.836  -3.809   3.869  1.00  0.00
ATOM    415  CA  GLU    65      -7.137  -4.669   4.822  1.00  0.00
ATOM    416  CB  GLU    65      -7.744  -4.524   6.219  1.00  0.00
ATOM    417  CG  GLU    65      -7.020  -5.317   7.295  1.00  0.00
ATOM    418  CD  GLU    65      -7.615  -5.105   8.674  1.00  0.00
ATOM    419  OE1 GLU    65      -8.603  -4.348   8.785  1.00  0.00
ATOM    420  OE2 GLU    65      -7.094  -5.695   9.643  1.00  0.00
ATOM    421  O   GLU    65      -8.211  -6.698   4.103  1.00  0.00
ATOM    422  C   GLU    65      -7.177  -6.161   4.498  1.00  0.00
ATOM    423  N   LEU    66      -6.031  -6.816   4.670  1.00  0.00
ATOM    424  CA  LEU    66      -5.896  -8.244   4.400  1.00  0.00
ATOM    425  CB  LEU    66      -4.817  -8.490   3.344  1.00  0.00
ATOM    426  CG  LEU    66      -5.037  -7.824   1.984  1.00  0.00
ATOM    427  CD1 LEU    66      -3.836  -8.046   1.076  1.00  0.00
ATOM    428  CD2 LEU    66      -6.265  -8.399   1.295  1.00  0.00
ATOM    429  O   LEU    66      -4.973  -8.436   6.609  1.00  0.00
ATOM    430  C   LEU    66      -5.509  -9.001   5.655  1.00  0.00
ATOM    431  N   MET    67      -5.770 -10.298   5.636  1.00  0.00
ATOM    432  CA  MET    67      -5.426 -11.174   6.740  1.00  0.00
ATOM    433  CB  MET    67      -6.316 -12.419   6.734  1.00  0.00
ATOM    434  CG  MET    67      -7.791 -12.129   6.956  1.00  0.00
ATOM    435  SD  MET    67      -8.791 -13.628   7.030  1.00  0.00
ATOM    436  CE  MET    67      -8.367 -14.235   8.660  1.00  0.00
ATOM    437  O   MET    67      -3.532 -11.768   5.407  1.00  0.00
ATOM    438  C   MET    67      -3.961 -11.560   6.540  1.00  0.00
TER
END



