
PFRMAT TS
TARGET T0357
AUTHOR SAM_T06_server
REMARK   6 
REMARK   6 T0357 model 5 Wed Jul  5 18:19:32 2006
METHOD The SAM-T06 server uses methods similar to SAM_T04 in CASP6 and
METHOD the SAM-T02 method in CASP5.
METHOD 
METHOD We start with a fully automated method:
METHOD    
METHOD     Use the SAM-T2K and SAM-T04 methods for finding homologs of the
METHOD       target and aligning them.
METHOD 
METHOD     Make local structure predictions using neural nets and the
METHOD       multiple alignments.  Different neural nets are used for the
METHOD       SAM-T2K alignments and the SAM-T04 alignments.
METHOD       We currently use 8 local-structure alphabets: 
METHOD 	DSSP
METHOD 	STRIDE
METHOD 	STR2	an extended version of DSSP that splits the beta strands
METHOD 		into multiple classes (parallel/antiparallel/mixed,
METHOD 					edge/center)
METHOD 	ALPHA	an discretization of the alpha torsion angle:
METHOD 		CA(i-i), CA(i), CA(i+1), CA(i+2)
METHOD 	BYS	a discretization of Ramachandran plots, due to Bystroff
METHOD 	CB_burial_14_7	a 7-state discretization of the number of C_beta
METHOD 		atoms in a 14 Angstrom radius sphere around the C_beta.
METHOD 	near-backbone-11 an 11-state discretization of the number of
METHOD 	      residues (represented by near-backbone points) in a 
METHOD 	      9.65 Angstrom radius sphere around the sidechain proxy
METHOD 	      spot for the residue.
METHOD 	DSSP_EHL2	CASP's collapse of the DSSP alphabet
METHOD 			DSSP_EHL2 is not predicted directly by a
METHOD 			neural net, but is computed as a weighted
METHOD 			average of the other backbone alphabet predictions. 
METHOD     
METHOD     We make 2-track HMMs with each alphabet (1.0 amino acid + 0.3 local structure)
METHOD       and use them to score a template library of 6400 (t04) or 9900 (t2k) templates
METHOD       We also used a single-track HMM to score not just the template
METHOD       library, but a non-redundant copy of the entire PDB.
METHOD 
METHOD     We also made a few 3-track HMMs (AA, str2, CB_burial_14_7 and 
METHOD       AA, str2, near-backbone-11) for finding and aligning more remote
METHOD       homologs.
METHOD     
METHOD     One-track HMMs built from the template library multiple alignments
METHOD        were used to score the target sequence (for early targets, only
METHOD        t2k template library was searched this way).
METHOD 
METHOD     All the logs of e-values were combined in a weighted average (with
METHOD        rather arbitrary weights, since we did not have time to
METHOD        optimize them), and the best templates ranked.  Ranking was
METHOD        separate for predictions from the t2k and t04 multiple alignments.
METHOD     
METHOD     Alignments of the target to the top templates were made using
METHOD       several different alignment methods (mainly using the SAM hmmscore
METHOD       program, but a few alignments were made with Bob Edgar's MUSCLE
METHOD       profile-profile aligner).
METHOD 
METHOD     Generate fragments (short 9-residue alignments for each position)
METHOD       using SAM's "fragfinder" program and the 3-track HMM.
METHOD 
METHOD     Then the "undertaker" program (named because it optimizes burial)
METHOD       is used to try to combine the alignments and the fragments into
METHOD       a consistent 3D model.  No single alignment or parent template
METHOD       was used, though in many cases one had much more influence than
METHOD       the others.  The alignment scores were not passed to undertaker,
METHOD       but were used only to pick the set of alignments and fragments
METHOD       that undertaker would see.  Helix and strand constraints
METHOD       generated from the secondary-structure predictions are passed to
METHOD       undertaker to use in the cost function.
METHOD 
METHOD     One important change in this server over previous methods is that
METHOD     sheet constraints are extracted from the top few alignments and
METHOD     passed to undertaker. 
METHOD -------------
MODEL  5
PARENT N/A
ATOM      2  N   VAL     2     -13.463  31.756  24.435  1.00  0.00
ATOM      3  CA  VAL     2     -14.646  31.236  23.758  1.00  0.00
ATOM      4  CB  VAL     2     -15.914  31.428  24.610  1.00  0.00
ATOM      5  CG1 VAL     2     -17.151  31.037  23.817  1.00  0.00
ATOM      6  CG2 VAL     2     -15.852  30.566  25.861  1.00  0.00
ATOM      7  O   VAL     2     -14.848  33.119  22.295  1.00  0.00
ATOM      8  C   VAL     2     -14.931  31.900  22.423  1.00  0.00
ATOM      9  N   LYS     3     -15.271  31.093  21.426  1.00  0.00
ATOM     10  CA  LYS     3     -15.638  31.637  20.131  1.00  0.00
ATOM     11  CB  LYS     3     -14.630  31.208  19.064  1.00  0.00
ATOM     12  CG  LYS     3     -13.225  31.745  19.286  1.00  0.00
ATOM     13  CD  LYS     3     -12.292  31.333  18.158  1.00  0.00
ATOM     14  CE  LYS     3     -10.886  31.858  18.386  1.00  0.00
ATOM     15  NZ  LYS     3      -9.981  31.538  17.246  1.00  0.00
ATOM     16  O   LYS     3     -17.223  29.895  19.746  1.00  0.00
ATOM     17  C   LYS     3     -17.017  31.103  19.786  1.00  0.00
ATOM     18  N   PHE     4     -17.966  32.009  19.578  1.00  0.00
ATOM     19  CA  PHE     4     -19.316  31.619  19.197  1.00  0.00
ATOM     20  CB  PHE     4     -20.344  32.565  19.823  1.00  0.00
ATOM     21  CG  PHE     4     -20.431  32.460  21.319  1.00  0.00
ATOM     22  CD1 PHE     4     -19.673  33.287  22.131  1.00  0.00
ATOM     23  CD2 PHE     4     -21.271  31.535  21.915  1.00  0.00
ATOM     24  CE1 PHE     4     -19.754  33.191  23.507  1.00  0.00
ATOM     25  CE2 PHE     4     -21.350  31.439  23.292  1.00  0.00
ATOM     26  CZ  PHE     4     -20.597  32.261  24.086  1.00  0.00
ATOM     27  O   PHE     4     -19.235  32.802  17.116  1.00  0.00
ATOM     28  C   PHE     4     -19.338  31.710  17.676  1.00  0.00
ATOM     29  N   ALA     5     -19.454  30.561  17.013  1.00  0.00
ATOM     30  CA  ALA     5     -19.483  30.544  15.561  1.00  0.00
ATOM     31  CB  ALA     5     -18.680  29.369  15.028  1.00  0.00
ATOM     32  O   ALA     5     -21.712  29.696  15.661  1.00  0.00
ATOM     33  C   ALA     5     -20.909  30.419  15.070  1.00  0.00
ATOM     34  N   CYS     6     -21.227  31.117  13.985  1.00  0.00
ATOM     35  CA  CYS     6     -22.577  31.087  13.435  1.00  0.00
ATOM     36  CB  CYS     6     -23.351  32.342  13.845  1.00  0.00
ATOM     37  SG  CYS     6     -25.055  32.397  13.243  1.00  0.00
ATOM     38  O   CYS     6     -21.985  31.907  11.265  1.00  0.00
ATOM     39  C   CYS     6     -22.538  31.024  11.914  1.00  0.00
ATOM     40  N   ARG     7     -23.116  29.969  11.350  1.00  0.00
ATOM     41  CA  ARG     7     -23.164  29.821   9.908  1.00  0.00
ATOM     42  CB  ARG     7     -22.447  28.541   9.475  1.00  0.00
ATOM     43  CG  ARG     7     -22.464  28.297   7.975  1.00  0.00
ATOM     44  CD  ARG     7     -21.696  27.036   7.612  1.00  0.00
ATOM     45  NE  ARG     7     -21.750  26.755   6.181  1.00  0.00
ATOM     46  CZ  ARG     7     -21.098  25.761   5.588  1.00  0.00
ATOM     47  NH1 ARG     7     -21.208  25.581   4.279  1.00  0.00
ATOM     48  NH2 ARG     7     -20.335  24.948   6.307  1.00  0.00
ATOM     49  O   ARG     7     -25.392  28.949  10.025  1.00  0.00
ATOM     50  C   ARG     7     -24.628  29.758   9.499  1.00  0.00
ATOM     51  N   ILE     9     -25.022  30.632   8.578  1.00  0.00
ATOM     52  CA  ILE     9     -26.404  30.664   8.117  1.00  0.00
ATOM     53  CB  ILE     9     -26.981  32.092   8.163  1.00  0.00
ATOM     54  CG1 ILE     9     -26.975  32.623   9.599  1.00  0.00
ATOM     55  CG2 ILE     9     -28.413  32.105   7.651  1.00  0.00
ATOM     56  CD1 ILE     9     -27.307  34.095   9.706  1.00  0.00
ATOM     57  O   ILE     9     -25.754  30.629   5.807  1.00  0.00
ATOM     58  C   ILE     9     -26.480  30.165   6.682  1.00  0.00
ATOM     59  N   THR    10     -27.370  29.214   6.448  1.00  0.00
ATOM     60  CA  THR    10     -27.498  28.627   5.129  1.00  0.00
ATOM     61  CB  THR    10     -26.577  27.403   4.965  1.00  0.00
ATOM     62  CG2 THR    10     -26.710  26.821   3.566  1.00  0.00
ATOM     63  OG1 THR    10     -25.216  27.794   5.177  1.00  0.00
ATOM     64  O   THR    10     -29.472  27.371   5.644  1.00  0.00
ATOM     65  C   THR    10     -28.927  28.171   4.883  1.00  0.00
ATOM     66  N   ARG    11     -29.532  28.703   3.824  1.00  0.00
ATOM     67  CA  ARG    11     -30.897  28.353   3.452  1.00  0.00
ATOM     68  CB  ARG    11     -30.944  26.951   2.842  1.00  0.00
ATOM     69  CG  ARG    11     -30.151  26.809   1.553  1.00  0.00
ATOM     70  CD  ARG    11     -30.336  25.430   0.940  1.00  0.00
ATOM     71  NE  ARG    11     -29.421  25.197  -0.173  1.00  0.00
ATOM     72  CZ  ARG    11     -29.395  24.086  -0.901  1.00  0.00
ATOM     73  NH1 ARG    11     -28.528  23.963  -1.896  1.00  0.00
ATOM     74  NH2 ARG    11     -30.239  23.098  -0.632  1.00  0.00
ATOM     75  O   ARG    11     -32.530  27.333   4.881  1.00  0.00
ATOM     76  C   ARG    11     -31.892  28.348   4.611  1.00  0.00
ATOM     77  N   GLY    12     -32.013  29.479   5.302  1.00  0.00
ATOM     78  CA  GLY    12     -32.963  29.582   6.400  1.00  0.00
ATOM     79  O   GLY    12     -33.455  28.894   8.637  1.00  0.00
ATOM     80  C   GLY    12     -32.643  28.875   7.707  1.00  0.00
ATOM     81  N   GLU    17     -31.475  28.245   7.786  1.00  0.00
ATOM     82  CA  GLU    17     -31.075  27.552   9.005  1.00  0.00
ATOM     83  CB  GLU    17     -30.819  26.070   8.720  1.00  0.00
ATOM     84  CG  GLU    17     -32.061  25.293   8.317  1.00  0.00
ATOM     85  CD  GLU    17     -31.780  23.819   8.099  1.00  0.00
ATOM     86  OE1 GLU    17     -30.609  23.408   8.247  1.00  0.00
ATOM     87  OE2 GLU    17     -32.730  23.073   7.781  1.00  0.00
ATOM     88  O   GLU    17     -28.940  28.614   8.771  1.00  0.00
ATOM     89  C   GLU    17     -29.799  28.182   9.542  1.00  0.00
ATOM     90  N   ALA    18     -29.684  28.242  10.865  1.00  0.00
ATOM     91  CA  ALA    18     -28.489  28.785  11.504  1.00  0.00
ATOM     92  CB  ALA    18     -28.867  29.887  12.482  1.00  0.00
ATOM     93  O   ALA    18     -28.473  26.861  12.940  1.00  0.00
ATOM     94  C   ALA    18     -27.814  27.631  12.242  1.00  0.00
ATOM     95  N   LEU    19     -26.504  27.512  12.073  1.00  0.00
ATOM     96  CA  LEU    19     -25.728  26.460  12.720  1.00  0.00
ATOM     97  CB  LEU    19     -24.911  25.681  11.685  1.00  0.00
ATOM     98  CG  LEU    19     -24.017  24.565  12.226  1.00  0.00
ATOM     99  CD1 LEU    19     -24.851  23.487  12.900  1.00  0.00
ATOM    100  CD2 LEU    19     -23.224  23.919  11.101  1.00  0.00
ATOM    101  O   LEU    19     -23.908  27.887  13.317  1.00  0.00
ATOM    102  C   LEU    19     -24.811  27.158  13.709  1.00  0.00
ATOM    103  N   VAL    20     -25.053  26.924  14.991  1.00  0.00
ATOM    104  CA  VAL    20     -24.290  27.577  16.044  1.00  0.00
ATOM    105  CB  VAL    20     -25.215  28.194  17.111  1.00  0.00
ATOM    106  CG1 VAL    20     -24.393  28.827  18.225  1.00  0.00
ATOM    107  CG2 VAL    20     -26.099  29.267  16.495  1.00  0.00
ATOM    108  O   VAL    20     -23.768  25.555  17.209  1.00  0.00
ATOM    109  C   VAL    20     -23.357  26.626  16.773  1.00  0.00
ATOM    110  N   THR    21     -22.097  27.028  16.912  1.00  0.00
ATOM    111  CA  THR    21     -21.107  26.181  17.558  1.00  0.00
ATOM    112  CB  THR    21     -20.271  25.402  16.524  1.00  0.00
ATOM    113  CG2 THR    21     -21.174  24.577  15.621  1.00  0.00
ATOM    114  OG1 THR    21     -19.524  26.322  15.719  1.00  0.00
ATOM    115  O   THR    21     -19.941  28.150  18.301  1.00  0.00
ATOM    116  C   THR    21     -20.099  26.938  18.428  1.00  0.00
ATOM    117  N   LYS    22     -19.422  26.207  19.309  1.00  0.00
ATOM    118  CA  LYS    22     -18.382  26.792  20.155  1.00  0.00
ATOM    119  CB  LYS    22     -18.781  26.708  21.630  1.00  0.00
ATOM    120  CG  LYS    22     -20.020  27.514  21.984  1.00  0.00
ATOM    121  CD  LYS    22     -20.361  27.383  23.460  1.00  0.00
ATOM    122  CE  LYS    22     -21.628  28.148  23.804  1.00  0.00
ATOM    123  NZ  LYS    22     -21.992  28.003  25.240  1.00  0.00
ATOM    124  O   LYS    22     -16.015  26.474  20.374  1.00  0.00
ATOM    125  C   LYS    22     -17.079  26.025  19.944  1.00  0.00
ATOM    126  N   GLU    23     -17.165  24.877  19.272  1.00  0.00
ATOM    127  CA  GLU    23     -15.989  24.045  19.008  1.00  0.00
ATOM    128  CB  GLU    23     -16.215  22.619  19.513  1.00  0.00
ATOM    129  CG  GLU    23     -16.345  22.509  21.023  1.00  0.00
ATOM    130  CD  GLU    23     -16.493  21.076  21.492  1.00  0.00
ATOM    131  OE1 GLU    23     -16.552  20.172  20.631  1.00  0.00
ATOM    132  OE2 GLU    23     -16.550  20.855  22.720  1.00  0.00
ATOM    133  O   GLU    23     -16.525  23.771  16.670  1.00  0.00
ATOM    134  C   GLU    23     -15.649  23.948  17.517  1.00  0.00
ATOM    135  N   TYR    24     -14.364  24.065  17.212  1.00  0.00
ATOM    136  CA  TYR    24     -13.870  23.996  15.845  1.00  0.00
ATOM    137  CB  TYR    24     -13.541  25.396  15.323  1.00  0.00
ATOM    138  CG  TYR    24     -13.149  25.429  13.862  1.00  0.00
ATOM    139  CD1 TYR    24     -14.113  25.360  12.865  1.00  0.00
ATOM    140  CD2 TYR    24     -11.815  25.530  13.486  1.00  0.00
ATOM    141  CE1 TYR    24     -13.766  25.388  11.528  1.00  0.00
ATOM    142  CE2 TYR    24     -11.450  25.562  12.153  1.00  0.00
ATOM    143  CZ  TYR    24     -12.438  25.490  11.174  1.00  0.00
ATOM    144  OH  TYR    24     -12.089  25.519   9.843  1.00  0.00
ATOM    145  O   TYR    24     -11.529  23.622  16.207  1.00  0.00
ATOM    146  C   TYR    24     -12.617  23.134  15.883  1.00  0.00
ATOM    147  N   ILE    25     -12.786  21.853  15.570  1.00  0.00
ATOM    148  CA  ILE    25     -11.697  20.882  15.590  1.00  0.00
ATOM    149  CB  ILE    25     -12.217  19.456  15.845  1.00  0.00
ATOM    150  CG1 ILE    25     -12.895  19.371  17.213  1.00  0.00
ATOM    151  CG2 ILE    25     -11.070  18.456  15.812  1.00  0.00
ATOM    152  CD1 ILE    25     -13.638  18.074  17.448  1.00  0.00
ATOM    153  O   ILE    25     -11.525  20.701  13.207  1.00  0.00
ATOM    154  C   ILE    25     -10.935  20.852  14.276  1.00  0.00
ATOM    155  N   SER    26      -9.618  20.981  14.365  1.00  0.00
ATOM    156  CA  SER    26      -8.765  20.971  13.184  1.00  0.00
ATOM    157  CB  SER    26      -7.353  21.442  13.540  1.00  0.00
ATOM    158  OG  SER    26      -6.496  21.379  12.413  1.00  0.00
ATOM    159  O   SER    26      -8.364  18.599  13.299  1.00  0.00
ATOM    160  C   SER    26      -8.664  19.563  12.592  1.00  0.00
ATOM    161  N   PHE    27      -8.940  19.447  11.298  1.00  0.00
ATOM    162  CA  PHE    27      -8.852  18.160  10.637  1.00  0.00
ATOM    163  CB  PHE    27      -9.801  18.107   9.439  1.00  0.00
ATOM    164  CG  PHE    27     -11.255  18.124   9.816  1.00  0.00
ATOM    165  CD1 PHE    27     -11.981  19.301   9.782  1.00  0.00
ATOM    166  CD2 PHE    27     -11.897  16.961  10.206  1.00  0.00
ATOM    167  CE1 PHE    27     -13.319  19.316  10.129  1.00  0.00
ATOM    168  CE2 PHE    27     -13.234  16.975  10.553  1.00  0.00
ATOM    169  CZ  PHE    27     -13.945  18.147  10.515  1.00  0.00
ATOM    170  O   PHE    27      -6.547  18.757  10.487  1.00  0.00
ATOM    171  C   PHE    27      -7.425  17.960  10.162  1.00  0.00
ATOM    172  N   LEU    28      -7.183  16.908   9.392  1.00  0.00
ATOM    173  CA  LEU    28      -5.839  16.645   8.890  1.00  0.00
ATOM    174  CB  LEU    28      -5.639  15.147   8.653  1.00  0.00
ATOM    175  CG  LEU    28      -5.729  14.247   9.888  1.00  0.00
ATOM    176  CD1 LEU    28      -5.612  12.783   9.495  1.00  0.00
ATOM    177  CD2 LEU    28      -4.612  14.568  10.869  1.00  0.00
ATOM    178  O   LEU    28      -4.417  17.373   7.122  1.00  0.00
ATOM    179  C   LEU    28      -5.556  17.347   7.581  1.00  0.00
ATOM    180  N   GLY    29      -6.588  17.922   6.977  1.00  0.00
ATOM    181  CA  GLY    29      -6.396  18.578   5.701  1.00  0.00
ATOM    182  O   GLY    29      -6.690  16.385   4.802  1.00  0.00
ATOM    183  C   GLY    29      -6.148  17.488   4.676  1.00  0.00
ATOM    184  N   GLY    30      -5.329  17.778   3.670  1.00  0.00
ATOM    185  CA  GLY    30      -5.053  16.776   2.653  1.00  0.00
ATOM    186  O   GLY    30      -6.954  17.616   1.465  1.00  0.00
ATOM    187  C   GLY    30      -6.194  16.663   1.657  1.00  0.00
ATOM    188  N   ILE    31      -6.322  15.497   1.027  1.00  0.00
ATOM    189  CA  ILE    31      -7.374  15.272   0.036  1.00  0.00
ATOM    190  CB  ILE    31      -6.794  15.158  -1.386  1.00  0.00
ATOM    191  CG1 ILE    31      -6.120  16.468  -1.794  1.00  0.00
ATOM    192  CG2 ILE    31      -7.897  14.850  -2.388  1.00  0.00
ATOM    193  CD1 ILE    31      -5.300  16.365  -3.063  1.00  0.00
ATOM    194  O   ILE    31      -7.549  13.042   0.906  1.00  0.00
ATOM    195  C   ILE    31      -8.119  13.978   0.354  1.00  0.00
ATOM    196  N   ASP    32      -9.415  13.910   0.014  1.00  0.00
ATOM    197  CA  ASP    32     -10.196  12.701   0.292  1.00  0.00
ATOM    198  CB  ASP    32     -11.622  12.850  -0.241  1.00  0.00
ATOM    199  CG  ASP    32     -12.459  13.804   0.590  1.00  0.00
ATOM    200  OD1 ASP    32     -12.001  14.196   1.683  1.00  0.00
ATOM    201  OD2 ASP    32     -13.572  14.157   0.146  1.00  0.00
ATOM    202  O   ASP    32      -9.183  11.479  -1.509  1.00  0.00
ATOM    203  C   ASP    32      -9.597  11.450  -0.353  1.00  0.00
ATOM    204  N   LYS    33      -9.549  10.357   0.402  1.00  0.00
ATOM    205  CA  LYS    33      -9.012   9.102  -0.117  1.00  0.00
ATOM    206  CB  LYS    33      -9.093   8.005   0.947  1.00  0.00
ATOM    207  CG  LYS    33      -8.481   6.680   0.518  1.00  0.00
ATOM    208  CD  LYS    33      -8.517   5.664   1.650  1.00  0.00
ATOM    209  CE  LYS    33      -7.921   4.336   1.217  1.00  0.00
ATOM    210  NZ  LYS    33      -7.935   3.334   2.320  1.00  0.00
ATOM    211  O   LYS    33     -11.061   8.615  -1.268  1.00  0.00
ATOM    212  C   LYS    33      -9.836   8.694  -1.335  1.00  0.00
ATOM    213  N   GLU    34      -9.157   8.447  -2.449  1.00  0.00
ATOM    214  CA  GLU    34      -9.859   8.055  -3.659  1.00  0.00
ATOM    215  CB  GLU    34     -11.311   7.692  -3.344  1.00  0.00
ATOM    216  CG  GLU    34     -11.471   6.412  -2.540  1.00  0.00
ATOM    217  CD  GLU    34     -12.916   6.125  -2.182  1.00  0.00
ATOM    218  OE1 GLU    34     -13.787   6.952  -2.523  1.00  0.00
ATOM    219  OE2 GLU    34     -13.175   5.074  -1.559  1.00  0.00
ATOM    220  O   GLU    34     -10.128   8.811  -5.906  1.00  0.00
ATOM    221  C   GLU    34      -9.912   9.124  -4.737  1.00  0.00
ATOM    222  N   THR    35      -9.715  10.385  -4.360  1.00  0.00
ATOM    223  CA  THR    35      -9.759  11.471  -5.334  1.00  0.00
ATOM    224  CB  THR    35      -9.914  12.841  -4.647  1.00  0.00
ATOM    225  CG2 THR    35     -11.188  12.880  -3.818  1.00  0.00
ATOM    226  OG1 THR    35      -8.792  13.074  -3.785  1.00  0.00
ATOM    227  O   THR    35      -8.499  12.177  -7.246  1.00  0.00
ATOM    228  C   THR    35      -8.498  11.548  -6.188  1.00  0.00
ATOM    229  N   ALA    50      -7.422  10.909  -5.738  1.00  0.00
ATOM    230  CA  ALA    50      -6.176  10.949  -6.494  1.00  0.00
ATOM    231  CB  ALA    50      -5.062  11.544  -5.648  1.00  0.00
ATOM    232  O   ALA    50      -4.465   9.389  -7.108  1.00  0.00
ATOM    233  C   ALA    50      -5.669   9.589  -6.969  1.00  0.00
ATOM    234  N   GLY    51      -6.582   8.657  -7.214  1.00  0.00
ATOM    235  CA  GLY    51      -6.176   7.352  -7.711  1.00  0.00
ATOM    236  O   GLY    51      -6.047   6.453  -5.483  1.00  0.00
ATOM    237  C   GLY    51      -5.874   6.269  -6.692  1.00  0.00
ATOM    238  N   ARG    52      -5.405   5.130  -7.200  1.00  0.00
ATOM    239  CA  ARG    52      -5.087   3.979  -6.367  1.00  0.00
ATOM    240  CB  ARG    52      -6.031   2.816  -6.678  1.00  0.00
ATOM    241  CG  ARG    52      -7.481   3.076  -6.305  1.00  0.00
ATOM    242  CD  ARG    52      -8.360   1.881  -6.635  1.00  0.00
ATOM    243  NE  ARG    52      -9.766   2.133  -6.327  1.00  0.00
ATOM    244  CZ  ARG    52     -10.752   1.285  -6.596  1.00  0.00
ATOM    245  NH1 ARG    52     -12.002   1.600  -6.278  1.00  0.00
ATOM    246  NH2 ARG    52     -10.490   0.125  -7.181  1.00  0.00
ATOM    247  O   ARG    52      -3.189   3.366  -7.710  1.00  0.00
ATOM    248  C   ARG    52      -3.660   3.475  -6.579  1.00  0.00
ATOM    249  N   ILE    53      -2.988   3.159  -5.477  1.00  0.00
ATOM    250  CA  ILE    53      -1.618   2.656  -5.524  1.00  0.00
ATOM    251  CB  ILE    53      -0.598   3.760  -5.189  1.00  0.00
ATOM    252  CG1 ILE    53      -0.855   4.314  -3.786  1.00  0.00
ATOM    253  CG2 ILE    53      -0.705   4.904  -6.186  1.00  0.00
ATOM    254  CD1 ILE    53       0.222   5.259  -3.297  1.00  0.00
ATOM    255  O   ILE    53      -2.308   1.369  -3.633  1.00  0.00
ATOM    256  C   ILE    53      -1.467   1.533  -4.513  1.00  0.00
ATOM    257  N   LEU    54      -0.407   0.741  -4.648  1.00  0.00
ATOM    258  CA  LEU    54      -0.158  -0.304  -3.668  1.00  0.00
ATOM    259  CB  LEU    54       0.288  -1.594  -4.362  1.00  0.00
ATOM    260  CG  LEU    54      -0.693  -2.193  -5.371  1.00  0.00
ATOM    261  CD1 LEU    54      -0.094  -3.421  -6.039  1.00  0.00
ATOM    262  CD2 LEU    54      -1.984  -2.610  -4.685  1.00  0.00
ATOM    263  O   LEU    54       1.750   1.084  -3.271  1.00  0.00
ATOM    264  C   LEU    54       0.941   0.281  -2.800  1.00  0.00
ATOM    265  N   VAL    55       0.953  -0.095  -1.527  1.00  0.00
ATOM    266  CA  VAL    55       1.974   0.407  -0.632  1.00  0.00
ATOM    267  CB  VAL    55       1.362   1.225   0.520  1.00  0.00
ATOM    268  CG1 VAL    55       2.448   1.710   1.467  1.00  0.00
ATOM    269  CG2 VAL    55       0.620   2.437  -0.024  1.00  0.00
ATOM    270  O   VAL    55       2.093  -1.662   0.536  1.00  0.00
ATOM    271  C   VAL    55       2.710  -0.784  -0.067  1.00  0.00
ATOM    272  N   PHE    56       4.020  -0.839  -0.278  1.00  0.00
ATOM    273  CA  PHE    56       4.801  -1.954   0.238  1.00  0.00
ATOM    274  CB  PHE    56       6.134  -2.063  -0.504  1.00  0.00
ATOM    275  CG  PHE    56       6.003  -2.556  -1.917  1.00  0.00
ATOM    276  CD1 PHE    56       5.896  -1.666  -2.969  1.00  0.00
ATOM    277  CD2 PHE    56       5.988  -3.913  -2.193  1.00  0.00
ATOM    278  CE1 PHE    56       5.777  -2.119  -4.269  1.00  0.00
ATOM    279  CE2 PHE    56       5.868  -4.367  -3.492  1.00  0.00
ATOM    280  CZ  PHE    56       5.762  -3.477  -4.528  1.00  0.00
ATOM    281  O   PHE    56       5.820  -0.798   2.076  1.00  0.00
ATOM    282  C   PHE    56       5.039  -1.680   1.715  1.00  0.00
ATOM    283  N   PRO    57       4.357  -2.449   2.558  1.00  0.00
ATOM    284  CA  PRO    57       4.433  -2.290   4.008  1.00  0.00
ATOM    285  CB  PRO    57       2.979  -2.413   4.469  1.00  0.00
ATOM    286  CG  PRO    57       2.353  -3.347   3.489  1.00  0.00
ATOM    287  CD  PRO    57       3.087  -3.143   2.193  1.00  0.00
ATOM    288  O   PRO    57       5.050  -4.547   4.550  1.00  0.00
ATOM    289  C   PRO    57       5.301  -3.349   4.685  1.00  0.00
ATOM    290  N   GLY    58       6.311  -2.907   5.432  1.00  0.00
ATOM    291  CA  GLY    58       7.201  -3.843   6.117  1.00  0.00
ATOM    292  O   GLY    58       8.310  -4.074   8.221  1.00  0.00
ATOM    293  C   GLY    58       7.751  -3.315   7.441  1.00  0.00
ATOM    294  N   GLY    59       7.605  -2.018   7.687  1.00  0.00
ATOM    295  CA  GLY    59       8.082  -1.423   8.932  1.00  0.00
ATOM    296  O   GLY    59       6.482   0.316   8.496  1.00  0.00
ATOM    297  C   GLY    59       7.379  -0.098   9.228  1.00  0.00
ATOM    298  N   THR    63       7.784   0.560  10.311  1.00  0.00
ATOM    299  CA  THR    63       7.179   1.824  10.711  1.00  0.00
ATOM    300  CB  THR    63       7.795   2.357  12.019  1.00  0.00
ATOM    301  CG2 THR    63       7.174   3.694  12.393  1.00  0.00
ATOM    302  OG1 THR    63       7.557   1.422  13.078  1.00  0.00
ATOM    303  O   THR    63       6.436   3.699   9.421  1.00  0.00
ATOM    304  C   THR    63       7.354   2.920   9.667  1.00  0.00
ATOM    305  N   VAL    64       8.531   2.973   9.052  1.00  0.00
ATOM    306  CA  VAL    64       8.826   3.977   8.031  1.00  0.00
ATOM    307  CB  VAL    64      10.284   3.877   7.545  1.00  0.00
ATOM    308  CG1 VAL    64      10.511   4.791   6.351  1.00  0.00
ATOM    309  CG2 VAL    64      11.242   4.288   8.654  1.00  0.00
ATOM    310  O   VAL    64       7.438   4.820   6.264  1.00  0.00
ATOM    311  C   VAL    64       7.938   3.829   6.799  1.00  0.00
ATOM    312  N   GLY    65       7.756   2.596   6.339  1.00  0.00
ATOM    313  CA  GLY    65       6.916   2.356   5.171  1.00  0.00
ATOM    314  O   GLY    65       4.656   3.012   4.673  1.00  0.00
ATOM    315  C   GLY    65       5.456   2.634   5.532  1.00  0.00
ATOM    316  N   SER    66       5.116   2.464   6.807  1.00  0.00
ATOM    317  CA  SER    66       3.751   2.715   7.267  1.00  0.00
ATOM    318  CB  SER    66       3.573   2.227   8.706  1.00  0.00
ATOM    319  OG  SER    66       3.688   0.816   8.784  1.00  0.00
ATOM    320  O   SER    66       2.380   4.629   6.825  1.00  0.00
ATOM    321  C   SER    66       3.473   4.210   7.211  1.00  0.00
ATOM    322  N   TYR    67       4.472   5.006   7.594  1.00  0.00
ATOM    323  CA  TYR    67       4.362   6.463   7.578  1.00  0.00
ATOM    324  CB  TYR    67       5.575   7.101   8.260  1.00  0.00
ATOM    325  CG  TYR    67       5.538   8.611   8.287  1.00  0.00
ATOM    326  CD1 TYR    67       4.735   9.288   9.197  1.00  0.00
ATOM    327  CD2 TYR    67       6.307   9.357   7.402  1.00  0.00
ATOM    328  CE1 TYR    67       4.696  10.670   9.227  1.00  0.00
ATOM    329  CE2 TYR    67       6.282  10.739   7.419  1.00  0.00
ATOM    330  CZ  TYR    67       5.467  11.393   8.343  1.00  0.00
ATOM    331  OH  TYR    67       5.430  12.768   8.372  1.00  0.00
ATOM    332  O   TYR    67       3.593   7.912   5.820  1.00  0.00
ATOM    333  C   TYR    67       4.291   6.945   6.133  1.00  0.00
ATOM    334  N   VAL    68       5.021   6.261   5.257  1.00  0.00
ATOM    335  CA  VAL    68       5.029   6.599   3.840  1.00  0.00
ATOM    336  CB  VAL    68       5.981   5.684   3.047  1.00  0.00
ATOM    337  CG1 VAL    68       5.824   5.920   1.553  1.00  0.00
ATOM    338  CG2 VAL    68       7.427   5.962   3.429  1.00  0.00
ATOM    339  O   VAL    68       3.113   7.272   2.551  1.00  0.00
ATOM    340  C   VAL    68       3.609   6.431   3.298  1.00  0.00
ATOM    341  N   LEU    69       2.963   5.336   3.683  1.00  0.00
ATOM    342  CA  LEU    69       1.596   5.059   3.246  1.00  0.00
ATOM    343  CB  LEU    69       1.151   3.676   3.726  1.00  0.00
ATOM    344  CG  LEU    69      -0.256   3.236   3.316  1.00  0.00
ATOM    345  CD1 LEU    69      -0.382   3.180   1.801  1.00  0.00
ATOM    346  CD2 LEU    69      -0.571   1.855   3.871  1.00  0.00
ATOM    347  O   LEU    69      -0.246   6.585   3.106  1.00  0.00
ATOM    348  C   LEU    69       0.632   6.094   3.810  1.00  0.00
ATOM    349  N   LEU    70       0.811   6.436   5.081  1.00  0.00
ATOM    350  CA  LEU    70      -0.043   7.427   5.719  1.00  0.00
ATOM    351  CB  LEU    70       0.404   7.671   7.162  1.00  0.00
ATOM    352  CG  LEU    70      -0.397   8.706   7.955  1.00  0.00
ATOM    353  CD1 LEU    70      -1.848   8.275   8.089  1.00  0.00
ATOM    354  CD2 LEU    70       0.180   8.878   9.353  1.00  0.00
ATOM    355  O   LEU    70      -1.002   9.368   4.674  1.00  0.00
ATOM    356  C   LEU    70       0.025   8.753   4.957  1.00  0.00
ATOM    357  N   ASN    71       1.237   9.179   4.611  1.00  0.00
ATOM    358  CA  ASN    71       1.430  10.434   3.890  1.00  0.00
ATOM    359  CB  ASN    71       2.920  10.698   3.664  1.00  0.00
ATOM    360  CG  ASN    71       3.638  11.107   4.934  1.00  0.00
ATOM    361  ND2 ASN    71       4.957  10.962   4.940  1.00  0.00
ATOM    362  OD1 ASN    71       3.012  11.549   5.899  1.00  0.00
ATOM    363  O   ASN    71       0.250  11.480   2.078  1.00  0.00
ATOM    364  C   ASN    71       0.760  10.449   2.515  1.00  0.00
ATOM    365  N   LEU    72       0.755   9.308   1.834  1.00  0.00
ATOM    366  CA  LEU    72       0.135   9.230   0.514  1.00  0.00
ATOM    367  CB  LEU    72       0.588   7.964  -0.216  1.00  0.00
ATOM    368  CG  LEU    72       2.070   7.889  -0.589  1.00  0.00
ATOM    369  CD1 LEU    72       2.405   6.532  -1.188  1.00  0.00
ATOM    370  CD2 LEU    72       2.423   8.962  -1.609  1.00  0.00
ATOM    371  O   LEU    72      -2.078   9.758  -0.255  1.00  0.00
ATOM    372  C   LEU    72      -1.392   9.195   0.599  1.00  0.00
ATOM    373  N   ARG    73      -1.929   8.534   1.620  1.00  0.00
ATOM    374  CA  ARG    73      -3.378   8.503   1.780  1.00  0.00
ATOM    375  CB  ARG    73      -3.767   7.630   2.973  1.00  0.00
ATOM    376  CG  ARG    73      -5.266   7.507   3.192  1.00  0.00
ATOM    377  CD  ARG    73      -5.583   6.537   4.318  1.00  0.00
ATOM    378  NE  ARG    73      -7.018   6.441   4.570  1.00  0.00
ATOM    379  CZ  ARG    73      -7.560   5.703   5.532  1.00  0.00
ATOM    380  NH1 ARG    73      -8.878   5.676   5.686  1.00  0.00
ATOM    381  NH2 ARG    73      -6.784   4.990   6.338  1.00  0.00
ATOM    382  O   ARG    73      -4.894  10.362   1.497  1.00  0.00
ATOM    383  C   ARG    73      -3.852   9.943   2.012  1.00  0.00
ATOM    384  N   LYS    74      -3.064  10.696   2.773  1.00  0.00
ATOM    385  CA  LYS    74      -3.374  12.091   3.079  1.00  0.00
ATOM    386  CB  LYS    74      -2.302  12.688   3.992  1.00  0.00
ATOM    387  CG  LYS    74      -2.318  12.140   5.411  1.00  0.00
ATOM    388  CD  LYS    74      -1.226  12.771   6.259  1.00  0.00
ATOM    389  CE  LYS    74      -1.239  12.219   7.675  1.00  0.00
ATOM    390  NZ  LYS    74      -0.155  12.805   8.510  1.00  0.00
ATOM    391  O   LYS    74      -4.113  13.951   1.750  1.00  0.00
ATOM    392  C   LYS    74      -3.434  12.926   1.800  1.00  0.00
ATOM    393  N   ASN    75      -2.719  12.486   0.769  1.00  0.00
ATOM    394  CA  ASN    75      -2.715  13.188  -0.510  1.00  0.00
ATOM    395  CB  ASN    75      -1.382  12.979  -1.231  1.00  0.00
ATOM    396  CG  ASN    75      -0.234  13.704  -0.559  1.00  0.00
ATOM    397  ND2 ASN    75       0.978  13.198  -0.751  1.00  0.00
ATOM    398  OD1 ASN    75      -0.437  14.707   0.127  1.00  0.00
ATOM    399  O   ASN    75      -3.833  12.833  -2.622  1.00  0.00
ATOM    400  C   ASN    75      -3.845  12.661  -1.401  1.00  0.00
ATOM    401  N   GLY    76      -4.823  12.008  -0.777  1.00  0.00
ATOM    402  CA  GLY    76      -5.970  11.488  -1.506  1.00  0.00
ATOM    403  O   GLY    76      -6.652   9.803  -3.052  1.00  0.00
ATOM    404  C   GLY    76      -5.800  10.175  -2.245  1.00  0.00
ATOM    405  N   VAL    77      -4.717   9.457  -1.974  1.00  0.00
ATOM    406  CA  VAL    77      -4.479   8.188  -2.650  1.00  0.00
ATOM    407  CB  VAL    77      -2.974   7.910  -2.814  1.00  0.00
ATOM    408  CG1 VAL    77      -2.749   6.548  -3.454  1.00  0.00
ATOM    409  CG2 VAL    77      -2.330   8.968  -3.699  1.00  0.00
ATOM    410  O   VAL    77      -4.824   6.815  -0.708  1.00  0.00
ATOM    411  C   VAL    77      -5.057   6.991  -1.908  1.00  0.00
ATOM    412  N   ALA    78      -5.829   6.178  -2.619  1.00  0.00
ATOM    413  CA  ALA    78      -6.386   4.972  -2.027  1.00  0.00
ATOM    414  CB  ALA    78      -7.580   4.488  -2.833  1.00  0.00
ATOM    415  O   ALA    78      -4.715   3.669  -3.147  1.00  0.00
ATOM    416  C   ALA    78      -5.235   3.976  -2.071  1.00  0.00
ATOM    417  N   PRO    79      -4.833   3.469  -0.913  1.00  0.00
ATOM    418  CA  PRO    79      -3.713   2.541  -0.870  1.00  0.00
ATOM    419  CB  PRO    79      -2.775   3.143   0.178  1.00  0.00
ATOM    420  CG  PRO    79      -3.682   3.840   1.135  1.00  0.00
ATOM    421  CD  PRO    79      -4.861   4.307   0.327  1.00  0.00
ATOM    422  O   PRO    79      -4.768   0.869   0.495  1.00  0.00
ATOM    423  C   PRO    79      -4.059   1.111  -0.481  1.00  0.00
ATOM    424  N   LYS    80      -3.556   0.166  -1.269  1.00  0.00
ATOM    425  CA  LYS    80      -3.747  -1.247  -0.990  1.00  0.00
ATOM    426  CB  LYS    80      -4.021  -2.017  -2.283  1.00  0.00
ATOM    427  CG  LYS    80      -4.290  -3.499  -2.078  1.00  0.00
ATOM    428  CD  LYS    80      -4.556  -4.200  -3.400  1.00  0.00
ATOM    429  CE  LYS    80      -4.848  -5.677  -3.193  1.00  0.00
ATOM    430  NZ  LYS    80      -5.118  -6.376  -4.480  1.00  0.00
ATOM    431  O   LYS    80      -1.388  -1.711  -1.009  1.00  0.00
ATOM    432  C   LYS    80      -2.428  -1.671  -0.344  1.00  0.00
ATOM    433  N   ALA    81      -2.446  -1.971   0.963  1.00  0.00
ATOM    434  CA  ALA    81      -1.204  -2.380   1.621  1.00  0.00
ATOM    435  CB  ALA    81      -1.381  -2.382   3.132  1.00  0.00
ATOM    436  O   ALA    81      -1.614  -4.693   1.136  1.00  0.00
ATOM    437  C   ALA    81      -0.787  -3.780   1.193  1.00  0.00
ATOM    438  N   ILE    82       0.496  -3.944   0.888  1.00  0.00
ATOM    439  CA  ILE    82       1.008  -5.236   0.458  1.00  0.00
ATOM    440  CB  ILE    82       1.443  -5.209  -1.019  1.00  0.00
ATOM    441  CG1 ILE    82       0.253  -4.866  -1.917  1.00  0.00
ATOM    442  CG2 ILE    82       1.990  -6.564  -1.439  1.00  0.00
ATOM    443  CD1 ILE    82       0.631  -4.614  -3.361  1.00  0.00
ATOM    444  O   ILE    82       3.154  -4.880   1.467  1.00  0.00
ATOM    445  C   ILE    82       2.215  -5.657   1.277  1.00  0.00
ATOM    446  N   ILE    83       2.170  -6.886   1.771  1.00  0.00
ATOM    447  CA  ILE    83       3.271  -7.442   2.537  1.00  0.00
ATOM    448  CB  ILE    83       2.779  -8.094   3.842  1.00  0.00
ATOM    449  CG1 ILE    83       2.081  -7.059   4.726  1.00  0.00
ATOM    450  CG2 ILE    83       3.947  -8.681   4.619  1.00  0.00
ATOM    451  CD1 ILE    83       1.381  -7.654   5.928  1.00  0.00
ATOM    452  O   ILE    83       3.307  -9.470   1.268  1.00  0.00
ATOM    453  C   ILE    83       3.939  -8.490   1.655  1.00  0.00
ATOM    454  N   ASN    84       5.208  -8.276   1.330  1.00  0.00
ATOM    455  CA  ASN    84       5.940  -9.225   0.503  1.00  0.00
ATOM    456  CB  ASN    84       6.880  -8.488  -0.454  1.00  0.00
ATOM    457  CG  ASN    84       7.585  -9.426  -1.414  1.00  0.00
ATOM    458  ND2 ASN    84       8.085  -8.877  -2.515  1.00  0.00
ATOM    459  OD1 ASN    84       7.677 -10.627  -1.168  1.00  0.00
ATOM    460  O   ASN    84       7.815  -9.749   1.908  1.00  0.00
ATOM    461  C   ASN    84       6.749 -10.124   1.431  1.00  0.00
ATOM    462  N   LYS    85       6.218 -11.309   1.700  1.00  0.00
ATOM    463  CA  LYS    85       6.905 -12.228   2.582  1.00  0.00
ATOM    464  CB  LYS    85       7.224 -11.553   3.917  1.00  0.00
ATOM    465  CG  LYS    85       5.997 -11.188   4.737  1.00  0.00
ATOM    466  CD  LYS    85       6.387 -10.506   6.039  1.00  0.00
ATOM    467  CE  LYS    85       5.161 -10.154   6.866  1.00  0.00
ATOM    468  NZ  LYS    85       5.528  -9.487   8.147  1.00  0.00
ATOM    469  O   LYS    85       5.149 -13.788   2.139  1.00  0.00
ATOM    470  C   LYS    85       6.076 -13.458   2.879  1.00  0.00
ATOM    471  N   LYS    86       6.408 -14.132   3.977  1.00  0.00
ATOM    472  CA  LYS    86       5.708 -15.342   4.380  1.00  0.00
ATOM    473  CB  LYS    86       6.695 -16.496   4.567  1.00  0.00
ATOM    474  CG  LYS    86       7.463 -16.866   3.309  1.00  0.00
ATOM    475  CD  LYS    86       8.338 -18.087   3.534  1.00  0.00
ATOM    476  CE  LYS    86       9.095 -18.466   2.272  1.00  0.00
ATOM    477  NZ  LYS    86       9.950 -19.668   2.476  1.00  0.00
ATOM    478  O   LYS    86       5.001 -14.027   6.254  1.00  0.00
ATOM    479  C   LYS    86       4.972 -15.122   5.695  1.00  0.00
ATOM    480  N   THR    87       4.311 -16.169   6.182  1.00  0.00
ATOM    481  CA  THR    87       3.588 -16.107   7.446  1.00  0.00
ATOM    482  CB  THR    87       2.561 -17.249   7.564  1.00  0.00
ATOM    483  CG2 THR    87       1.454 -17.078   6.535  1.00  0.00
ATOM    484  OG1 THR    87       3.212 -18.506   7.341  1.00  0.00
ATOM    485  O   THR    87       4.653 -17.258   9.260  1.00  0.00
ATOM    486  C   THR    87       4.585 -16.225   8.595  1.00  0.00
ATOM    487  N   GLU    88       5.359 -15.167   8.819  1.00  0.00
ATOM    488  CA  GLU    88       6.360 -15.158   9.884  1.00  0.00
ATOM    489  CB  GLU    88       7.720 -14.718   9.338  1.00  0.00
ATOM    490  CG  GLU    88       8.315 -15.670   8.314  1.00  0.00
ATOM    491  CD  GLU    88       9.658 -15.199   7.793  1.00  0.00
ATOM    492  OE1 GLU    88      10.093 -14.094   8.180  1.00  0.00
ATOM    493  OE2 GLU    88      10.278 -15.935   6.995  1.00  0.00
ATOM    494  O   GLU    88       4.840 -13.748  11.101  1.00  0.00
ATOM    495  C   GLU    88       5.982 -14.202  11.013  1.00  0.00
ATOM    496  N   THR    89       6.953 -13.900  11.870  1.00  0.00
ATOM    497  CA  THR    89       6.728 -12.996  12.991  1.00  0.00
ATOM    498  CB  THR    89       7.828 -13.139  14.060  1.00  0.00
ATOM    499  CG2 THR    89       7.758 -14.508  14.718  1.00  0.00
ATOM    500  OG1 THR    89       9.115 -12.984  13.449  1.00  0.00
ATOM    501  O   THR    89       6.095 -10.702  13.206  1.00  0.00
ATOM    502  C   THR    89       6.715 -11.544  12.554  1.00  0.00
TER
END



